Cluster no. 177

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Cluster is part of supercluster: 90

Cluster characteristics:

size 7139
size_real 7139
ecount 131129
supercluster 90
annotations_summary 3.19% Class_I/LINE:LINE-RT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
pair_completeness 0.784303924018995
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.232245412522762
satellite_probability 1.41443504701467e-12
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 228 0.03194
Ale Ty1-RT Ale Ty1-RT 1 0.00014
Athila Ty3-INT Athila Ty3-INT 2 0.00028

clusters with similarity:

Cluster Number of similarity hits
2 1
6 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
30 7 0.00177
2060 7 0.0159
2 6 0.00102
7 5 0.00103
17 5 0.000823
51 5 0.00155
6 4 0.000969
47 4 0.00141
68 4 0.00218
134 4 0.00242
181 4 0.00343
276 4 0.0049
14 3 0.000813
66 3 0.000948
79 3 0.00108
85 3 0.00174
95 3 0.00221
119 3 0.00312
126 3 0.00195
170 3 0.00202
273 3 0.00349
11700 3 0.0069
74300 3 0.00693
1 2 0.000519
3 2 0.000504
16 2 0.000691
22 2 0.000652
26 2 0.000821
33 2 0.00118
63 2 0.000599
74 2 0.00109
76 2 0.00115
78 2 0.000696
99 2 0.00184
112 2 0.00186
139 2 0.00133
157 2 0.00168
169 2 0.00174
178 2 0.00225
182 2 0.00166
189 2 0.00145
191 2 0.00148
215 2 0.00244
217 2 0.00213
243 2 0.00196
4310 2 0.00457
22800 2 0.00461
115000 2 0.00462
238000 2 0.00462
328000 2 0.00462
4 1 0.000266
5 1 0.000512
8 1 0.000508
9 1 0.000334
10 1 0.000569
11 1 0.000258
18 1 0.000456
20 1 0.000265
21 1 0.000372
24 1 0.000293
27 1 0.000586
28 1 0.000553
29 1 0.000459
31 1 0.000188
34 1 0.000367
35 1 0.00028
36 1 0.000519
37 1 0.00029
38 1 0.000629
39 1 0.000547
41 1 0.000302
42 1 0.00046
45 1 0.000332
48 1 0.000279
49 1 0.000483
50 1 0.000497
54 1 0.000717
56 1 0.00153
57 1 7e-04
58 1 0.000809
61 1 0.000497
69 1 0.000689
70 1 0.000792
72 1 0.000602
80 1 0.000575
81 1 0.000383
86 1 0.000354
90 1 0.00036
91 1 0.000923
98 1 0.000773
101 1 0.000523
102 1 0.000368
104 1 0.000809
109 1 0.000903
110 1 0.000781
114 1 0.000953
120 1 0.000591
122 1 0.000618
128 1 0.000894
130 1 0.000412
136 1 0.000996
138 1 0.000873
141 1 0.000607
146 1 0.00087
159 1 0.000823
160 1 0.000793
161 1 0.000582
162 1 0.000632
166 1 0.000914
171 1 0.000794
172 1 0.000635
173 1 0.0011
175 1 0.000995
179 1 0.00098
196 1 0.000682
203 1 0.00103
205 1 0.000949
207 1 0.00145
212 1 0.00132
223 1 0.00132
245 1 0.000973
264 1 0.00152
269 1 0.00178
358 1 0.00209
361 1 0.00191
381 1 0.00181
446 1 0.00202
464 1 0.00212
492 1 0.00209
831 1 0.00221
1040 1 0.00221
1670 1 0.00226
1830 1 0.00227
2930 1 0.00229
5820 1 0.00229
5930 1 0.0023
6980 1 0.0023
8640 1 0.0023
8830 1 0.0023
10700 1 0.0023
12100 1 0.00231
12500 1 0.0023
19600 1 0.0023
21400 1 0.0023
21400 1 0.00231
22000 1 0.00231
30700 1 0.00231
32000 1 0.00231
35700 1 0.00231
36100 1 0.00231
39900 1 0.00231
40800 1 0.00231
47800 1 0.00231
54500 1 0.00231
57100 1 0.00231
57900 1 0.00231
58000 1 0.00231
61600 1 0.00231
70800 1 0.00231
74200 1 0.00231
87100 1 0.00231
88100 1 0.00231
92100 1 0.00231
131000 1 0.00231
131000 1 0.00231
142000 1 0.00231
144000 1 0.00231
152000 1 0.00231
153000 1 0.00231
156000 1 0.00231
171000 1 0.00231
172000 1 0.00231
194000 1 0.00231
216000 1 0.00231
228000 1 0.00231
229000 1 0.00231
256000 1 0.00231
262000 1 0.00231
264000 1 0.00231
308000 1 0.00231
315000 1 0.00231
322000 1 0.00231
343000 1 0.00231