Cluster no. 178

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Cluster is part of supercluster: 91

Cluster characteristics:

size 7137
size_real 7137
ecount 64677
supercluster 91
annotations_summary 10.86% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
5.51% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
4.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
2.51% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-CHDII
2.21% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
1.72% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.53% organelle/mitochondria
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.772287062329277
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0606697491943394
satellite_probability 3.02598182057364e-19
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 38 0.00532
Tekay Ty3-CHDII Tekay Ty3-CHDII 179 0.02508
Tekay Ty3-GAG Tekay Ty3-GAG 158 0.02214
Reina Ty3-INT Reina Ty3-INT 1 0.00014
Tekay Ty3-INT Tekay Ty3-INT 775 0.10859
Tekay Ty3-PROT Tekay Ty3-PROT 123 0.01723
CRM Ty3-RH CRM Ty3-RH 1 0.00014
Tekay Ty3-RH Tekay Ty3-RH 296 0.04147
Tekay Ty3-RT Tekay Ty3-RT 393 0.05507

clusters with similarity:

Cluster Number of similarity hits
166 2
9 1
17 1
47 1
48 1
122 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
398 15 0.0313
412 9 0.0185
1300 7 0.0149
5200 7 0.0151
2940 6 0.0129
2 5 0.000846
17 5 0.000819
31 5 0.000933
51 5 0.00154
5000 5 0.0108
8610 5 0.0108
23900 5 0.0108
1 4 0.00103
9 4 0.00133
20 4 0.00105
48 4 0.00111
77 4 0.00238
99 4 0.00358
130 4 0.00163
4620 4 0.00865
5200 4 0.00869
7740 4 0.00866
14800 4 0.00868
6 3 0.000722
24 3 0.000873
68 3 0.00161
85 3 0.00172
122 3 0.00182
123 3 0.00205
189 3 0.00214
2540 3 0.00646
3090 3 0.00646
4890 3 0.00649
5960 3 0.00647
9420 3 0.00652
10900 3 0.0065
14600 3 0.00651
27200 3 0.00651
3 2 0.000501
4 2 0.000528
7 2 0.00041
13 2 0.00107
29 2 0.000907
32 2 0.00106
33 2 0.00116
40 2 0.00051
63 2 0.000594
66 2 0.000627
71 2 0.000755
81 2 0.000758
82 2 0.00142
87 2 0.00115
105 2 0.00107
110 2 0.00153
114 2 0.00186
126 2 0.00128
149 2 0.00178
151 2 0.00151
162 2 0.00124
163 2 0.00117
167 2 0.00113
170 2 0.00132
177 2 0.00225
197 2 0.00148
565 2 0.00404
1960 2 0.00427
2710 2 0.00432
8820 2 0.00433
12100 2 0.00433
12900 2 0.00432
15800 2 0.00435
24800 2 0.00435
57400 2 0.00435
66800 2 0.00435
75500 2 0.00435
93400 2 0.00435
105000 2 0.00435
116000 2 0.00435
133000 2 0.00435
142000 2 0.00435
143000 2 0.00435
202000 2 0.00435
206000 2 0.00435
245000 2 0.00435
256000 2 0.00435
281000 2 0.00435
291000 2 0.00435
319000 2 0.00435
320000 2 0.00435
323000 2 0.00435
338000 2 0.00435
5 1 0.000505
12 1 0.000226
14 1 0.000269
15 1 0.000363
16 1 0.000342
18 1 0.00045
19 1 0.000439
25 1 0.000449
27 1 0.000577
30 1 0.000251
35 1 0.000278
36 1 0.000512
38 1 0.000618
43 1 0.000336
44 1 0.000296
46 1 0.000506
47 1 0.000348
49 1 0.000477
50 1 0.00049
52 1 0.000447
56 1 0.00147
58 1 0.000792
60 1 0.00067
62 1 0.000326
73 1 0.000784
74 1 0.000535
78 1 0.000345
83 1 0.000621
86 1 0.00035
88 1 0.000369
90 1 0.000357
102 1 0.000365
104 1 0.000792
108 1 0.000805
111 1 0.000339
113 1 0.000584
117 1 0.000624
120 1 0.000582
127 1 0.000616
132 1 0.000841
135 1 0.000714
136 1 0.00097
140 1 0.000425
146 1 0.00085
148 1 0.000676
152 1 0.000462
153 1 0.000578
156 1 0.000782
157 1 0.000823
165 1 0.000618
166 1 0.000892
172 1 0.000624
173 1 0.00106
179 1 0.000955
184 1 0.00117
186 1 0.000585
194 1 0.00157
199 1 0.00138
201 1 0.00179
207 1 0.0014
212 1 0.00127
213 1 0.000655
216 1 0.00138
223 1 0.00127
231 1 0.00156
232 1 0.00118
242 1 0.00109
244 1 0.00177
247 1 0.00106
250 1 0.00163
252 1 0.00137
254 1 0.00169
265 1 0.00172
288 1 0.00142
291 1 0.00157
292 1 0.00142
314 1 0.0017
323 1 0.0019
332 1 0.00181
340 1 0.00193
391 1 0.00192
401 1 0.00203
464 1 0.002
616 1 0.0021
718 1 0.00208
853 1 0.00209
2020 1 0.00215
2130 1 0.00215
2350 1 0.00214
3090 1 0.00215
3110 1 0.00215
6390 1 0.00216
6440 1 0.00216
6500 1 0.00216
8030 1 0.00217
9470 1 0.00216
13000 1 0.00216
14100 1 0.00216
14700 1 0.00217
15400 1 0.00216
15600 1 0.00217
18100 1 0.00217
20900 1 0.00217
24600 1 0.00217
26400 1 0.00217
26800 1 0.00217
27900 1 0.00217
27900 1 0.00218
28100 1 0.00217
30500 1 0.00218
31600 1 0.00217
32100 1 0.00217
33100 1 0.00218
33200 1 0.00218
34100 1 0.00218
37200 1 0.00218
38900 1 0.00218
40900 1 0.00217
42300 1 0.00218
43100 1 0.00217
43100 1 0.00217
45300 1 0.00217
45300 1 0.00218
46200 1 0.00217
48600 1 0.00217
59100 1 0.00218
62500 1 0.00218
68800 1 0.00218
77700 1 0.00218
78300 1 0.00218
80800 1 0.00218
82600 1 0.00218
99900 1 0.00218
102000 1 0.00218
106000 1 0.00218
127000 1 0.00218
148000 1 0.00218
150000 1 0.00218
151000 1 0.00218
155000 1 0.00218
168000 1 0.00218
185000 1 0.00218
190000 1 0.00218
199000 1 0.00218
2e+05 1 0.00218
216000 1 0.00218
224000 1 0.00218
225000 1 0.00218
238000 1 0.00218
245000 1 0.00218
258000 1 0.00218
262000 1 0.00218
272000 1 0.00218
278000 1 0.00218
284000 1 0.00218
286000 1 0.00218
291000 1 0.00218
301000 1 0.00218
305000 1 0.00218
316000 1 0.00218
328000 1 0.00218
333000 1 0.00218
341000 1 0.00218
342000 1 0.00218
342000 1 0.00218
348000 1 0.00218
348000 1 0.00218

CL178 ----> CL398

image

No. of shared pairs: :15