Cluster no. 179

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Cluster is part of supercluster: 1

Cluster characteristics:

size 7108
size_real 7108
ecount 652159
supercluster 1
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
pair_completeness 0.715664977069756
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00689364096792347
satellite_probability 1.10115207681596e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatII Ty3-RH TatII Ty3-RH 1 0.00014

clusters with similarity:

Cluster Number of similarity hits
67 2640
72 1120
57 205
43 3
349 2
6 1
26 1
69 1
93 1
102 1
138 1
245 1
492 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
67 435 0.162
57 150 0.0946
72 38 0.0209
28 9 0.00458
12 6 0.00132
43 6 0.00193
6 5 0.00117
15 5 0.00173
17 5 0.000802
22 5 0.00155
31 5 0.000911
34 5 0.00173
36 5 0.0024
93 5 0.00374
102 5 0.00174
1 4 0.000997
11 4 0.000991
26 4 0.00154
40 4 0.000986
48 4 0.00107
58 4 0.00287
110 4 0.00278
115 4 0.00174
125 4 0.00303
175 4 0.00344
12100 4 0.00676
2 3 0.000497
3 3 0.000727
4 3 0.000766
8 3 0.00141
9 3 0.000953
14 3 0.000779
16 3 0.000983
21 3 0.00106
42 3 0.00129
44 3 0.000856
45 3 0.000945
46 3 0.00142
66 3 0.000903
71 3 0.00108
86 3 0.00101
89 3 0.00161
100 3 0.002
108 3 0.00218
113 3 0.00163
126 3 0.00177
142 3 0.00215
153 3 0.00161
171 3 0.00212
6430 3 0.00505
7 2 4e-04
13 2 0.000999
19 2 0.00083
20 2 0.000509
25 2 0.000848
33 2 0.00108
60 2 0.00123
69 2 0.00124
73 2 0.00142
75 2 0.000572
81 2 0.000722
84 2 0.000954
90 2 0.000682
105 2 0.000998
106 2 0.00102
107 2 0.00157
114 2 0.00166
116 2 0.000771
117 2 0.00115
120 2 0.00108
127 2 0.00114
134 2 0.0011
138 2 0.00153
139 2 0.0012
145 2 0.00102
155 2 0.00153
156 2 0.00142
169 2 0.00153
172 2 0.00115
181 2 0.00151
187 2 0.00166
188 2 0.00288
228 2 0.00243
238 2 0.0023
245 2 0.00169
252 2 0.00233
6220 2 0.00337
23 1 0.00035
24 1 0.00028
29 1 0.000428
30 1 0.000243
32 1 0.000496
39 1 0.000504
41 1 0.000288
47 1 0.000333
49 1 0.000449
52 1 0.000422
54 1 0.000644
55 1 0.000236
59 1 0.000608
63 1 0.000286
64 1 0.000693
65 1 0.000544
70 1 0.000704
74 1 0.000501
76 1 0.000528
77 1 0.000552
80 1 0.000527
87 1 0.000537
88 1 0.000352
91 1 0.000805
92 1 0.000844
95 1 0.00066
98 1 0.000689
99 1 0.000802
103 1 0.000394
104 1 0.000718
109 1 0.000791
111 1 0.000325
118 1 0.00073
122 1 0.000563
129 1 0.000857
132 1 0.000758
135 1 0.000653
137 1 0.000664
140 1 0.000402
141 1 0.000554
143 1 0.00057
144 1 0.000924
149 1 0.000799
150 1 0.000647
151 1 0.000686
152 1 0.000435
159 1 0.000728
170 1 0.00061
173 1 0.000935
174 1 0.000612
176 1 0.000936
177 1 0.00098
178 1 0.000955
186 1 0.000544
190 1 0.00075
198 1 0.00101
199 1 0.00117
204 1 0.00112
206 1 0.000964
211 1 0.000917
213 1 0.000604
220 1 0.00103
229 1 0.000836
231 1 0.00129
247 1 0.000928
267 1 0.00104
278 1 0.00139
292 1 0.0012
293 1 0.0014
327 1 0.00146
332 1 0.00147
492 1 0.00157
588 1 0.00162
597 1 0.0016
646 1 0.00162
1320 1 0.00166
1380 1 0.00166
2440 1 0.00168
3280 1 0.00168
5330 1 0.00169
5720 1 0.00168
6100 1 0.00168
6900 1 0.00169
7010 1 0.00169
8570 1 0.00169
11300 1 0.00169
11900 1 0.00169
13700 1 0.00169
15100 1 0.00169
19200 1 0.00169
21800 1 0.0017
22400 1 0.00169
27200 1 0.00169
70800 1 0.00169
85800 1 0.00169
99800 1 0.00169
120000 1 0.00169
172000 1 0.00169
188000 1 0.00169
236000 1 0.00169
246000 1 0.00169
255000 1 0.00169
259000 1 0.00169
267000 1 0.00169
282000 1 0.00169
290000 1 0.00169
316000 1 0.00169
327000 1 0.00169
332000 1 0.00169

CL179 ----> CL67

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No. of shared pairs: :435

CL179 ----> CL57

image

No. of shared pairs: :150

CL179 ----> CL72

image

No. of shared pairs: :38