Cluster no. 180

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Cluster is part of supercluster: 92

Cluster characteristics:

size 7043
size_real 7043
ecount 153891
supercluster 92
annotations_summary 3.38% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
1.66% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.81% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.79622545269064
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00340763879028823
satellite_probability 2.63652108321905e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 57 0.0081
TatII Ty3-GAG TatII Ty3-GAG 238 0.0338
TatV Ty3-GAG TatV Ty3-GAG 117 0.0166

clusters with similarity:

Cluster Number of similarity hits
14 438
15 369
23 11
9 10
4 3
5 1
33 1
134 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
15 168 0.0623
14 135 0.0369
9 40 0.0135
23 39 0.0146
4 12 0.00322
5 7 0.00365
17 5 0.000827
220 5 0.00637
5150 4 0.0099
19000 4 0.00994
33300 4 0.00996
3 3 0.000762
8 3 0.00155
48 3 0.000846
52 3 0.00138
53 3 0.000939
67 3 0.00121
123 3 0.00214
187 3 0.00295
12600 3 0.00745
14000 3 0.00746
14800 3 0.00748
34800 3 0.00747
25 2 0.000922
33 2 0.0012
38 2 0.00128
46 2 0.00104
49 2 0.000981
56 2 0.00322
57 2 0.00143
74 2 0.00111
75 2 0.000605
99 2 0.00189
104 2 0.00166
120 2 0.0012
121 2 0.00222
128 2 0.00184
142 2 0.00166
144 2 0.00224
3110 2 0.00493
3920 2 0.00493
16700 2 0.00498
23600 2 0.00499
40000 2 0.00498
64400 2 0.00499
184000 2 0.00499
310000 2 0.00499
1 1 0.000262
6 1 0.000244
7 1 0.000208
16 1 0.000349
21 1 0.000377
26 1 0.000416
28 1 0.000563
29 1 0.000466
31 1 0.000189
35 1 0.000283
36 1 0.000528
40 1 0.000259
55 1 0.000247
58 1 0.000831
59 1 0.000687
60 1 0.000698
64 1 0.000798
68 1 0.000555
71 1 0.000386
72 1 0.000614
86 1 0.000358
87 1 0.000598
88 1 0.000377
98 1 0.000793
101 1 0.000532
105 1 0.000551
106 1 0.000567
109 1 0.00093
110 1 0.000801
112 1 0.000959
113 1 0.000605
119 1 0.00108
126 1 0.000664
127 1 0.000639
132 1 0.000885
133 1 0.000323
134 1 0.000616
147 1 0.000336
158 1 0.000749
162 1 0.000645
163 1 0.000604
191 1 0.000758
196 1 0.000697
197 1 0.000771
213 1 0.000682
217 1 0.0011
221 1 0.00157
234 1 0.00179
235 1 0.000972
256 1 0.00157
266 1 0.00172
500 1 0.00232
668 1 0.00237
2800 1 0.00246
3250 1 0.00246
3260 1 0.00249
3760 1 0.00246
6390 1 0.00248
7930 1 0.00248
9210 1 0.00249
10200 1 0.00249
11200 1 0.00248
11200 1 0.00248
16000 1 0.00249
18300 1 0.00249
19500 1 0.00248
20000 1 0.0025
20100 1 0.00249
21600 1 0.00249
21700 1 0.00249
25600 1 0.00249
31600 1 0.00249
34900 1 0.00249
40200 1 0.00249
51400 1 0.00249
59600 1 0.0025
60700 1 0.0025
61200 1 0.0025
62500 1 0.0025
63200 1 0.00249
71300 1 0.0025
73200 1 0.0025
80700 1 0.0025
87100 1 0.0025
92900 1 0.0025
99600 1 0.0025
119000 1 0.0025
126000 1 0.0025
127000 1 0.0025
132000 1 0.0025
154000 1 0.0025
165000 1 0.0025
198000 1 0.0025
2e+05 1 0.0025
230000 1 0.0025
271000 1 0.0025
302000 1 0.0025
325000 1 0.0025
340000 1 0.0025
343000 1 0.0025

CL180 ----> CL15

image

No. of shared pairs: :168

CL180 ----> CL14

image

No. of shared pairs: :135

CL180 ----> CL9

image

No. of shared pairs: :40

CL180 ----> CL23

image

No. of shared pairs: :39

CL180 ----> CL4

image

No. of shared pairs: :12