Cluster no. 181

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Cluster is part of supercluster: 93

Cluster characteristics:

size 7039
size_real 7039
ecount 312187
supercluster 93
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RH
pair_completeness 0.655067011521279
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.13524648387555
satellite_probability 2.19546417637361e-15
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-RH Athila Ty3-RH 1 0.00014

clusters with similarity:

Cluster Number of similarity hits
126 14
17 1
31 1
48 1
145 1
154 1
239 1
276 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
2 12 0.00194
17 11 0.00172
5590 8 0.0108
7 7 0.00136
1340 7 0.00942
31 6 0.00107
9 5 0.00152
11 5 0.0012
16 5 0.00156
39 5 0.00235
78 5 0.00157
88 5 0.00168
99 5 0.00359
18500 5 0.00679
27500 5 0.00679
3 4 0.000937
14 4 0.001
15 4 0.00132
20 4 0.000981
32 4 0.00185
48 4 0.00103
49 4 0.00169
51 4 0.00114
67 4 0.00142
74 4 0.00187
81 4 0.00137
85 4 0.00198
95 4 0.00241
97 4 0.00178
130 4 0.00147
177 4 0.00343
2980 4 0.00541
3280 4 0.00542
5730 4 0.00543
8350 4 0.00542
10900 4 0.00542
15900 4 0.00543
16900 4 0.00544
25900 4 0.00543
32000 4 0.00544
4 3 0.000738
5 3 0.00133
19 3 0.00117
22 3 0.00089
24 3 0.000809
26 3 0.0011
47 3 0.000954
54 3 0.00177
59 3 0.00168
75 3 0.000824
119 3 0.00238
126 3 0.00163
128 3 0.00211
134 3 0.00153
143 3 0.00158
151 3 0.00187
152 3 0.00123
172 3 0.0016
189 3 0.00179
227 3 0.0029
786 3 0.00398
1520 3 0.00406
2280 3 0.00407
6980 3 0.00406
7940 3 0.00408
8420 3 0.00408
10900 3 0.00408
11200 3 0.00408
15900 3 0.00407
16800 3 0.00407
19600 3 0.00408
24000 3 0.00408
75700 3 0.00408
6 2 0.000452
12 2 0.000426
18 2 0.000801
21 2 0.000669
23 2 0.000666
29 2 0.000806
30 2 0.00047
34 2 0.000661
36 2 0.000897
40 2 0.000476
43 2 0.000615
45 2 0.000603
50 2 0.000864
52 2 0.000796
57 2 0.00116
58 2 0.0013
60 2 0.00113
68 2 0.000936
80 2 0.000979
86 2 0.000639
92 2 0.0015
94 2 0.00195
96 2 0.00118
102 2 0.000663
106 2 0.000954
153 2 0.000998
162 2 0.00106
169 2 0.00138
171 2 0.00128
179 2 0.00151
183 2 0.00134
186 2 0.00101
187 2 0.00148
195 2 0.00183
196 2 0.00113
205 2 0.00147
218 2 0.00213
219 2 0.00194
229 2 0.00149
242 2 0.00168
3230 2 0.0027
4020 2 0.00271
5880 2 0.00271
11000 2 0.00272
12200 2 0.00272
13200 2 0.00272
20800 2 0.00272
23700 2 0.00272
25900 2 0.00272
26000 2 0.00272
26000 2 0.00272
27300 2 0.00272
32100 2 0.00272
32300 2 0.00272
33400 2 0.00272
34400 2 0.00272
35500 2 0.00272
36400 2 0.00272
38000 2 0.00272
41000 2 0.00272
42200 2 0.00272
46500 2 0.00272
54200 2 0.00272
54600 2 0.00272
69000 2 0.00272
69200 2 0.00272
74200 2 0.00272
75600 2 0.00272
77700 2 0.00272
82400 2 0.00272
90400 2 0.00272
151000 2 0.00272
173000 2 0.00272
190000 2 0.00272
229000 2 0.00272
248000 2 0.00272
255000 2 0.00272
265000 2 0.00272
271000 2 0.00272
339000 2 0.00272
13 1 0.000466
25 1 0.000399
37 1 0.000266
38 1 0.000529
41 1 0.000276
53 1 0.000283
55 1 0.000229
61 1 0.000432
63 1 0.000275
64 1 0.00063
66 1 0.000288
69 1 0.00057
70 1 0.000639
72 1 0.000509
73 1 0.000645
76 1 0.000491
83 1 0.00053
87 1 0.000498
89 1 0.000497
91 1 0.000722
98 1 0.000627
100 1 0.000607
101 1 0.000452
104 1 0.00065
105 1 0.000465
107 1 0.000706
108 1 0.000659
110 1 0.000632
112 1 0.000726
114 1 0.00074
115 1 0.000409
120 1 0.000502
121 1 0.000811
122 1 0.000521
123 1 0.000576
131 1 0.00101
132 1 0.000683
140 1 0.00038
141 1 0.000513
145 1 0.000473
148 1 0.00057
149 1 0.000717
150 1 0.000592
155 1 0.000688
156 1 0.000644
158 1 0.000599
159 1 0.000659
161 1 0.000495
163 1 0.000503
165 1 0.000529
170 1 0.00056
173 1 0.000824
174 1 0.000562
176 1 0.000824
185 1 0.000663
191 1 0.000605
198 1 0.00088
200 1 0.000641
213 1 0.000555
234 1 0.00112
237 1 0.000955
239 1 0.000964
244 1 0.00119
245 1 0.000752
251 1 0.0011
265 1 0.00117
266 1 0.00109
270 1 0.00129
273 1 0.000861
277 1 0.00116
291 1 0.0011
294 1 0.00112
314 1 0.00116
354 1 0.00121
515 1 0.00128
605 1 0.00133
626 1 0.00133
776 1 0.00133
975 1 0.00135
1190 1 0.00133
1440 1 0.00134
1510 1 0.00135
3580 1 0.00135
4050 1 0.00135
4660 1 0.00136
6640 1 0.00136
6650 1 0.00135
7240 1 0.00136
7730 1 0.00136
8440 1 0.00136
8490 1 0.00136
8820 1 0.00136
9400 1 0.00136
10800 1 0.00136
11500 1 0.00136
11900 1 0.00136
14300 1 0.00136
15300 1 0.00136
15900 1 0.00136
16000 1 0.00136
16700 1 0.00136
17400 1 0.00136
17500 1 0.00136
18800 1 0.00136
18900 1 0.00136
19200 1 0.00136
20000 1 0.00136
20100 1 0.00136
21100 1 0.00136
21300 1 0.00136
22000 1 0.00136
22100 1 0.00136
23100 1 0.00136
23400 1 0.00136
24400 1 0.00136
24800 1 0.00136
25000 1 0.00136
25100 1 0.00136
25400 1 0.00136
25900 1 0.00136
26500 1 0.00136
28100 1 0.00136
29500 1 0.00136
30000 1 0.00136
31600 1 0.00136
31700 1 0.00136
32000 1 0.00136
32100 1 0.00136
32300 1 0.00136
32700 1 0.00136
32800 1 0.00136
33700 1 0.00136
34500 1 0.00136
36700 1 0.00136
36900 1 0.00136
37000 1 0.00136
37200 1 0.00136
37300 1 0.00136
38800 1 0.00136
38800 1 0.00136
41500 1 0.00136
43500 1 0.00136
44300 1 0.00136
44700 1 0.00136
44900 1 0.00136
45900 1 0.00136
46400 1 0.00136
47400 1 0.00136
48500 1 0.00136
50700 1 0.00136
51000 1 0.00136
52000 1 0.00136
52900 1 0.00136
53200 1 0.00136
54800 1 0.00136
55300 1 0.00136
59300 1 0.00136
59700 1 0.00136
61600 1 0.00136
61700 1 0.00136
63600 1 0.00136
64300 1 0.00136
66600 1 0.00136
67700 1 0.00136
68200 1 0.00136
69400 1 0.00136
71300 1 0.00136
73200 1 0.00136
74500 1 0.00136
74600 1 0.00136
74700 1 0.00136
78800 1 0.00136
79100 1 0.00136
79700 1 0.00136
80800 1 0.00136
80900 1 0.00136
81200 1 0.00136
82500 1 0.00136
82600 1 0.00136
83400 1 0.00136
86100 1 0.00136
87400 1 0.00136
87600 1 0.00136
106000 1 0.00136
107000 1 0.00136
107000 1 0.00136
110000 1 0.00136
111000 1 0.00136
112000 1 0.00136
114000 1 0.00136
115000 1 0.00136
116000 1 0.00136
116000 1 0.00136
116000 1 0.00136
117000 1 0.00136
126000 1 0.00136
127000 1 0.00136
128000 1 0.00136
133000 1 0.00136
134000 1 0.00136
136000 1 0.00136
138000 1 0.00136
138000 1 0.00136
145000 1 0.00136
149000 1 0.00136
153000 1 0.00136
157000 1 0.00136
157000 1 0.00136
159000 1 0.00136
160000 1 0.00136
162000 1 0.00136
170000 1 0.00136
173000 1 0.00136
175000 1 0.00136
178000 1 0.00136
181000 1 0.00136
183000 1 0.00136
190000 1 0.00136
192000 1 0.00136
194000 1 0.00136
196000 1 0.00136
198000 1 0.00136
198000 1 0.00136
201000 1 0.00136
205000 1 0.00136
205000 1 0.00136
207000 1 0.00136
210000 1 0.00136
210000 1 0.00136
215000 1 0.00136
215000 1 0.00136
218000 1 0.00136
224000 1 0.00136
226000 1 0.00136
229000 1 0.00136
229000 1 0.00136
230000 1 0.00136
233000 1 0.00136
234000 1 0.00136
246000 1 0.00136
247000 1 0.00136
254000 1 0.00136
260000 1 0.00136
261000 1 0.00136
266000 1 0.00136
267000 1 0.00136
288000 1 0.00136
293000 1 0.00136
302000 1 0.00136
311000 1 0.00136
312000 1 0.00136
312000 1 0.00136
329000 1 0.00136
330000 1 0.00136
333000 1 0.00136
334000 1 0.00136
335000 1 0.00136
335000 1 0.00136
341000 1 0.00136

CL181 ----> CL2

image

No. of shared pairs: :12

CL181 ----> CL17

image

No. of shared pairs: :11