Cluster no. 182

Go back to cluster table

Cluster is part of supercluster: 1

Cluster characteristics:

size 6908
size_real 6908
ecount 1285687
supercluster 1
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-RT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.635416666666667
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.023306311522872
satellite_probability 3.2248535574017e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-INT Tekay Ty3-INT 1 0.00014
TatIII Ty3-RT TatIII Ty3-RT 1 0.00014

clusters with similarity:

Cluster Number of similarity hits
41 47900
4 5730
1 1770
79 1530
102 797
411 4
61 1
83 1
115 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
41 559 0.153
1 266 0.0634
4 68 0.0166
79 52 0.0167
31 48 0.00847
52 16 0.00628
16 7 0.00217
27 7 0.00342
42 7 0.00279
77 7 0.00351
11 6 0.00142
21 6 0.00198
102 6 0.00197
6 5 0.00112
17 5 0.000779
19 5 0.00193
26 5 0.0018
33 5 0.00245
34 5 0.00163
134 5 0.00251
5 4 0.00175
10 4 0.00191
18 4 0.00158
24 4 0.00107
29 4 0.00159
32 4 0.00182
39 4 0.00185
40 4 0.000944
46 4 0.00175
53 4 0.00112
55 4 0.000907
83 4 0.00208
97 4 0.00175
115 4 0.00161
2 3 0.000482
13 3 0.00137
22 3 0.000881
35 3 0.000767
37 3 0.000791
44 3 0.000814
49 3 0.00125
64 3 0.00185
71 3 0.00101
87 3 0.00147
103 3 0.0011
133 3 0.000866
3 2 0.000464
12 2 0.000423
43 2 0.000608
50 2 0.000851
54 2 0.00115
59 2 0.0011
61 2 0.000851
63 2 0.000544
66 2 0.000571
67 2 7e-04
75 2 0.000544
82 2 0.00116
86 2 0.000632
91 2 0.00141
92 2 0.00146
93 2 0.00132
98 2 0.00123
99 2 0.0014
101 2 0.000889
104 2 0.00127
105 2 0.000915
108 2 0.00129
111 2 0.000613
117 2 0.00104
121 2 0.00157
127 2 0.00103
130 2 0.000723
135 2 0.00117
136 2 0.00149
141 2 0.00101
147 2 0.000598
156 2 0.00126
158 2 0.00117
177 2 0.00166
189 2 0.00117
196 2 0.00111
237 2 0.00185
305 2 0.00246
148000 2 0.00259
7 1 0.000193
8 1 0.000433
9 1 3e-04
15 1 0.000326
23 1 0.000329
25 1 0.000394
28 1 0.000466
30 1 0.000233
36 1 0.000441
60 1 0.000554
62 1 0.000296
70 1 0.000624
73 1 0.00063
74 1 0.000459
80 1 0.000481
81 1 0.000339
89 1 0.000488
95 1 0.000589
100 1 0.000594
109 1 0.000692
116 1 0.00036
123 1 0.000564
124 1 0.000609
126 1 0.000533
131 1 0.000973
140 1 0.000375
142 1 0.000635
143 1 0.000517
145 1 0.000465
146 1 0.000672
152 1 0.000404
153 1 0.00049
157 1 0.000655
160 1 0.000625
167 1 0.000481
168 1 0.000527
169 1 0.000673
170 1 0.000549
171 1 0.000626
173 1 8e-04
176 1 8e-04
185 1 0.000647
186 1 0.000495
190 1 0.00066
191 1 0.000592
198 1 0.000853
206 1 0.000821
209 1 0.00103
219 1 0.000937
226 1 0.00103
234 1 0.00108
244 1 0.00114
245 1 0.000732
249 1 0.000987
259 1 0.00102
260 1 0.00104
276 1 0.000866
278 1 0.00111
283 1 0.00113
288 1 0.000986
318 1 0.00105
323 1 0.00119
324 1 0.00109
367 1 0.0012
400 1 0.0012
417 1 0.00121
421 1 0.00127
540 1 0.00127
546 1 0.00124
651 1 0.00125
673 1 0.00125
676 1 0.00125
806 1 0.00126
898 1 0.00127
1150 1 0.00127
1170 1 0.00129
1300 1 0.0013
3380 1 0.00129
3770 1 0.00129
6860 1 0.0013
7330 1 0.0013
13100 1 0.00129
16400 1 0.00129
16700 1 0.00129
18500 1 0.0013
20900 1 0.0013
24100 1 0.0013
25100 1 0.0013
35500 1 0.0013
40300 1 0.0013
47000 1 0.0013
61700 1 0.0013
62500 1 0.0013
67200 1 0.0013
77700 1 0.0013
84100 1 0.0013
98200 1 0.0013
108000 1 0.0013
113000 1 0.0013
126000 1 0.0013
130000 1 0.0013
142000 1 0.0013
160000 1 0.0013
176000 1 0.0013
293000 1 0.0013
302000 1 0.0013

CL182 ----> CL41

image

No. of shared pairs: :559

CL182 ----> CL1

image

No. of shared pairs: :266

CL182 ----> CL4

image

No. of shared pairs: :68

CL182 ----> CL79

image

No. of shared pairs: :52

CL182 ----> CL31

image

No. of shared pairs: :48

CL182 ----> CL52

image

No. of shared pairs: :16