Cluster no. 184

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Cluster is part of supercluster: 62

Cluster characteristics:

size 6843
size_real 6843
ecount 90775
supercluster 62
annotations_summary 3.16% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-GAG
2.29% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-PROT
0.69% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.790892436534938
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0894344585708023
satellite_probability 4.75126347050983e-18
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Galadriel Ty3-GAG Galadriel Ty3-GAG 216 0.03157
Galadriel Ty3-PROT Galadriel Ty3-PROT 157 0.02294
Reina Ty3-PROT Reina Ty3-PROT 47 0.00687
Tekay Ty3-RT Tekay Ty3-RT 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
217 17
88 4
31 2
9 1
63 1
245 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
217 132 0.146
17 7 0.00116
283 7 0.0137
7260 6 0.0149
14300 4 0.00993
24 3 0.000889
31 3 0.000566
48 3 0.000846
134 3 0.00185
222 3 0.00393
234 3 0.00536
13600 3 0.00744
17600 3 0.00745
1 2 0.000523
4 2 0.000536
7 2 0.000415
9 2 0.000676
13 2 0.0011
14 2 0.000547
19 2 0.000901
41 2 0.000609
42 2 0.000933
51 2 0.000628
91 2 0.0019
102 2 0.000746
164 2 0.00328
3350 2 0.00493
13800 2 0.00498
17100 2 0.00499
18700 2 0.00498
21700 2 0.00499
25600 2 0.00499
25900 2 0.00499
27300 2 0.00499
37100 2 0.00498
45300 2 0.00498
60600 2 0.00499
60700 2 0.00499
64200 2 0.00499
68300 2 0.00499
72800 2 0.00499
96700 2 0.00499
177000 2 0.00499
193000 2 0.00499
198000 2 0.00499
209000 2 0.00499
225000 2 0.00499
251000 2 0.00499
292000 2 0.00499
297000 2 0.00499
317000 2 0.00499
2 1 0.000171
3 1 0.000254
5 1 0.000521
8 1 0.000516
10 1 0.000579
11 1 0.00026
12 1 0.000229
16 1 0.000349
18 1 0.000463
20 1 0.000267
22 1 0.000329
23 1 0.000374
25 1 0.000461
27 1 0.000597
29 1 0.000466
33 1 6e-04
34 1 0.000371
35 1 0.000283
36 1 0.000528
52 1 0.000459
56 1 0.00161
57 1 0.000716
63 1 0.000302
64 1 0.000798
66 1 0.000319
69 1 0.000704
72 1 0.000614
74 1 0.000553
77 1 0.000617
81 1 0.000387
85 1 0.000592
92 1 0.00101
93 1 0.000871
98 1 0.000793
100 1 0.000762
105 1 0.000551
112 1 0.000959
114 1 0.000983
122 1 0.000631
124 1 0.000787
128 1 0.00092
136 1 0.00103
144 1 0.00112
147 1 0.000336
148 1 0.000704
150 1 0.000737
152 1 0.000475
157 1 0.000865
160 1 0.000813
163 1 0.000604
167 1 0.000585
169 1 0.000897
172 1 0.000648
176 1 0.00114
178 1 0.00117
183 1 0.000864
193 1 0.00118
196 1 0.000697
197 1 0.000771
200 1 0.000815
233 1 0.00181
245 1 0.001
362 1 0.00215
2080 1 0.00245
6470 1 0.00248
7920 1 0.00248
14400 1 0.00249
15200 1 0.00249
15400 1 0.00249
16300 1 0.00249
16300 1 0.00249
19200 1 0.00248
19600 1 0.00249
20200 1 0.00248
23000 1 0.00249
26300 1 0.00249
27400 1 0.00249
31600 1 0.00249
32000 1 0.0025
37500 1 0.00249
40200 1 0.00249
40300 1 0.0025
43600 1 0.00249
44000 1 0.0025
46300 1 0.00249
47800 1 0.0025
52100 1 0.0025
63800 1 0.0025
66700 1 0.00249
68100 1 0.0025
68500 1 0.00249
68500 1 0.0025
69800 1 0.00249
71900 1 0.0025
72200 1 0.00249
72500 1 0.0025
74500 1 0.0025
76400 1 0.00249
79800 1 0.00249
91600 1 0.0025
93300 1 0.0025
104000 1 0.0025
110000 1 0.0025
127000 1 0.0025
143000 1 0.0025
161000 1 0.0025
164000 1 0.0025
166000 1 0.0025
179000 1 0.0025
179000 1 0.0025
180000 1 0.0025
187000 1 0.0025
201000 1 0.0025
231000 1 0.0025
232000 1 0.0025
232000 1 0.0025
243000 1 0.0025
247000 1 0.0025
249000 1 0.0025
262000 1 0.0025
271000 1 0.0025
272000 1 0.0025
284000 1 0.0025
291000 1 0.0025
328000 1 0.0025
345000 1 0.0025

CL184 ----> CL217

image

No. of shared pairs: :132