Cluster no. 185

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Cluster is part of supercluster: 95

Cluster characteristics:

size 6806
size_real 6806
ecount 60371
supercluster 95
annotations_summary 0.01% Class_I/Penelope:Penelope-RT
0.01% organelle/plastid
pair_completeness 0.62900909526089
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000440787540405525
satellite_probability 4.97759293480724e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00015
Penelope Penelope-RT Penelope Penelope-RT 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
24 33
90 5
102 1
208 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
90 197 0.0632
24 155 0.0413
905 11 0.0138
585 8 0.01
17 7 0.00109
130 6 0.00217
169 5 0.00336
6 4 0.000895
31 4 0.000705
227 4 0.00372
30000 4 0.00515
15 3 0.000977
19 3 0.00116
23 3 0.000985
29 3 0.00119
66 3 0.000855
74 3 0.00137
87 3 0.00146
102 3 0.000981
120 3 0.00147
11700 3 0.00386
27200 3 0.00386
59300 3 0.00386
3 2 0.000464
7 2 0.000385
9 2 6e-04
16 2 0.000618
33 2 0.000979
34 2 0.000652
44 2 0.000542
63 2 0.000543
76 2 0.000962
86 2 0.000631
97 2 0.000871
110 2 0.00123
114 2 0.00144
153 2 0.000978
174 2 0.0011
206 2 0.00164
213 2 0.00109
12300 2 0.00257
17200 2 0.00257
22800 2 0.00257
24900 2 0.00258
25600 2 0.00258
25800 2 0.00257
30500 2 0.00257
49300 2 0.00258
62400 2 0.00258
81900 2 0.00258
91900 2 0.00258
99100 2 0.00258
103000 2 0.00258
104000 2 0.00258
108000 2 0.00258
118000 2 0.00258
140000 2 0.00258
146000 2 0.00258
159000 2 0.00258
163000 2 0.00258
195000 2 0.00258
260000 2 0.00258
271000 2 0.00258
284000 2 0.00258
318000 2 0.00258
349000 2 0.00258
1 1 0.000238
2 1 0.000161
4 1 0.000244
5 1 0.000436
8 1 0.000432
10 1 0.000476
11 1 0.000237
12 1 0.000211
14 1 0.000248
18 1 0.000394
20 1 0.000243
21 1 0.00033
22 1 0.000293
25 1 0.000393
26 1 0.00036
32 1 0.000454
35 1 0.000255
39 1 0.000461
40 1 0.000236
46 1 0.000436
48 1 0.000255
50 1 0.000424
58 1 0.000633
61 1 0.000424
67 1 0.000349
68 1 0.000459
69 1 0.000557
72 1 0.000499
75 1 0.000272
85 1 0.000484
89 1 0.000487
96 1 0.000574
98 1 0.000611
104 1 0.000633
108 1 0.000641
111 1 0.000306
115 1 0.000402
118 1 0.000643
122 1 0.00051
124 1 0.000608
127 1 0.000516
131 1 0.000969
134 1 5e-04
138 1 0.000672
145 1 0.000464
147 1 0.000299
149 1 0.000696
151 1 0.000609
152 1 0.000403
163 1 0.000492
170 1 0.000547
172 1 0.000521
173 1 0.000796
181 1 0.000663
182 1 0.000647
183 1 0.000653
186 1 0.000494
188 1 0.00114
189 1 0.000581
199 1 0.000962
203 1 0.00076
208 1 0.000857
212 1 0.000907
214 1 0.000921
220 1 0.000861
238 1 0.000947
245 1 0.000729
255 1 0.000825
259 1 0.00102
275 1 0.00119
294 1 0.00107
303 1 0.00114
304 1 0.00123
313 1 0.00111
400 1 0.0012
443 1 0.00126
449 1 0.00122
1270 1 0.00127
1950 1 0.00127
4510 1 0.00128
4800 1 0.00128
5460 1 0.00128
5810 1 0.00128
7490 1 0.00128
8880 1 0.00128
8890 1 0.00128
13200 1 0.00128
19200 1 0.00129
19700 1 0.00129
24900 1 0.00129
26300 1 0.00129
27400 1 0.00129
31500 1 0.00129
36000 1 0.00129
42300 1 0.00129
43300 1 0.00129
47300 1 0.00129
48000 1 0.00129
52300 1 0.00129
56700 1 0.00129
57600 1 0.00129
60700 1 0.00129
60900 1 0.00129
62600 1 0.00129
62900 1 0.00129
63500 1 0.00129
63800 1 0.00129
64700 1 0.00129
64900 1 0.00129
67500 1 0.00129
67600 1 0.00129
69000 1 0.00129
79600 1 0.00129
80500 1 0.00129
81700 1 0.00129
98900 1 0.00129
108000 1 0.00129
113000 1 0.00129
119000 1 0.00129
120000 1 0.00129
143000 1 0.00129
152000 1 0.00129
160000 1 0.00129
166000 1 0.00129
170000 1 0.00129
172000 1 0.00129
175000 1 0.00129
179000 1 0.00129
215000 1 0.00129
223000 1 0.00129
227000 1 0.00129
230000 1 0.00129
230000 1 0.00129
242000 1 0.00129
245000 1 0.00129
251000 1 0.00129
259000 1 0.00129
261000 1 0.00129
264000 1 0.00129
279000 1 0.00129
289000 1 0.00129
291000 1 0.00129
292000 1 0.00129
306000 1 0.00129
341000 1 0.00129
343000 1 0.00129
345000 1 0.00129
346000 1 0.00129

CL185 ----> CL90

image

No. of shared pairs: :197

CL185 ----> CL24

image

No. of shared pairs: :155

CL185 ----> CL905

image

No. of shared pairs: :11