Cluster no. 186

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Cluster is part of supercluster: 5

Cluster characteristics:

size 6541
size_real 6541
ecount 92654
supercluster 5
annotations_summary 2.94% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
pair_completeness 0.44712389380531
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000458645467053967
satellite_probability 4.28848727092841e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Gymco-II Ty1-GAG Gymco-II Ty1-GAG 192 0.02935
TatII Ty3-INT TatII Ty3-INT 1 0.00015
Tekay Ty3-RH Tekay Ty3-RH 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
7 1010
86 262
163 79
205 64
11 31
30 1
47 1
151 1
235 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
7 890 0.157
86 190 0.0521
11 116 0.0247
205 20 0.0107
2 16 0.00239
17 14 0.00203
20 9 0.00196
31 7 0.00114
45 6 0.00157
66 6 0.00151
15 5 0.00141
22 5 0.00129
47 5 0.00137
172 5 0.00209
26 4 0.00123
88 4 0.00114
92 4 0.00217
97 4 0.00144
3 3 0.000627
6 3 0.000607
9 3 0.000788
21 3 0.000856
24 3 0.00071
30 3 0.000629
40 3 0.000636
44 3 0.00072
48 3 0.000682
49 3 0.00104
50 3 0.00106
63 3 0.000721
90 3 0.000835
98 3 0.00142
115 3 0.00101
145 3 0.00114
162 3 0.00125
52400 3 0.0024
4 2 0.000437
10 2 0.000776
14 2 0.000444
34 2 0.000564
43 2 0.000531
52 2 0.00066
64 2 0.000951
67 2 0.000599
71 2 0.000581
72 2 0.000807
81 2 0.000583
95 2 0.000919
114 2 0.00107
121 2 0.00114
126 2 0.000849
130 2 0.000616
134 2 0.000808
139 2 0.000861
147 2 0.000523
151 2 0.000945
153 2 0.000793
158 2 0.000916
163 2 0.000798
165 2 0.000831
169 2 0.00102
170 2 0.000869
181 2 0.00101
189 2 0.000911
195 2 0.00124
243 2 0.00109
11800 2 0.0016
23700 2 0.0016
60700 2 0.0016
71400 2 0.0016
83200 2 0.0016
139000 2 0.0016
2e+05 2 0.0016
276000 2 0.0016
280000 2 0.0016
312000 2 0.0016
326000 2 0.0016
1 1 0.000214
8 1 0.000359
13 1 0.000376
16 1 0.000269
18 1 0.000332
25 1 0.000331
29 1 0.000334
35 1 0.000228
36 1 0.000364
37 1 0.000234
38 1 0.000415
39 1 0.000378
41 1 0.000242
42 1 0.000334
51 1 0.000248
53 1 0.000247
62 1 0.000259
69 1 0.000441
73 1 0.000484
74 1 0.000376
75 1 0.000241
76 1 0.000392
80 1 0.000391
82 1 0.000454
84 1 0.000363
89 1 0.000396
96 1 0.000451
102 1 0.000283
103 1 0.000313
104 1 0.000487
111 1 0.000267
113 1 0.000399
118 1 0.000493
120 1 0.000398
123 1 0.000444
127 1 0.000414
133 1 0.000254
136 1 0.000549
137 1 0.000461
138 1 0.000509
140 1 0.000318
142 1 0.000487
143 1 0.000414
144 1 0.000574
150 1 0.000453
152 1 0.000338
157 1 0.000498
160 1 0.000481
161 1 0.000394
171 1 0.000481
173 1 0.000578
178 1 0.000585
179 1 0.000544
182 1 0.000495
185 1 0.000494
194 1 0.000701
203 1 0.000559
212 1 0.000634
215 1 0.000611
217 1 0.00057
226 1 0.000688
227 1 0.000646
229 1 0.000539
234 1 0.000709
235 1 0.000532
238 1 0.000653
239 1 0.000644
245 1 0.000542
271 1 0.000741
273 1 0.000596
276 1 0.000612
285 1 0.000726
288 1 0.000669
294 1 0.000709
302 1 0.000738
324 1 0.000714
371 1 0.000772
400 1 0.000764
405 1 0.000763
418 1 0.000764
428 1 0.000793
457 1 0.000758
483 1 0.000776
681 1 0.000791
730 1 0.000783
761 1 0.000786
820 1 0.000788
944 1 0.000794
1200 1 0.000787
1260 1 0.000791
1700 1 0.000792
2020 1 0.000797
2840 1 0.000796
3110 1 0.000795
4720 1 0.000797
6120 1 0.000797
7550 1 0.000798
7870 1 0.000798
9570 1 0.000798
9850 1 0.000799
11000 1 0.000798
11300 1 0.000799
11500 1 0.000799
12400 1 0.000799
12400 1 0.000798
13000 1 8e-04
13200 1 0.000799
14300 1 0.000798
16200 1 0.000799
19900 1 8e-04
22600 1 0.000799
37000 1 8e-04
38500 1 0.000799
40700 1 0.000799
46500 1 0.000799
48300 1 0.000799
50500 1 8e-04
54100 1 8e-04
54600 1 8e-04
57900 1 0.000799
58800 1 8e-04
63100 1 8e-04
64900 1 0.000799
65300 1 0.000799
67000 1 8e-04
67500 1 0.000799
70200 1 8e-04
72700 1 8e-04
73700 1 8e-04
78900 1 8e-04
91600 1 8e-04
1e+05 1 8e-04
111000 1 8e-04
121000 1 8e-04
123000 1 8e-04
126000 1 8e-04
130000 1 8e-04
141000 1 8e-04
143000 1 8e-04
145000 1 8e-04
155000 1 8e-04
169000 1 8e-04
171000 1 8e-04
198000 1 8e-04
201000 1 8e-04
212000 1 8e-04
214000 1 8e-04
215000 1 8e-04
246000 1 8e-04
263000 1 8e-04
268000 1 8e-04
276000 1 8e-04
282000 1 8e-04
304000 1 8e-04
306000 1 8e-04
309000 1 8e-04
322000 1 8e-04

CL186 ----> CL7

image

No. of shared pairs: :890

CL186 ----> CL86

image

No. of shared pairs: :190

CL186 ----> CL11

image

No. of shared pairs: :116

CL186 ----> CL205

image

No. of shared pairs: :20

CL186 ----> CL2

image

No. of shared pairs: :16

CL186 ----> CL17

image

No. of shared pairs: :14