Cluster no. 187

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Cluster is part of supercluster: 96

Cluster characteristics:

size 6532
size_real 6532
ecount 163982
supercluster 96
annotations_summary 0.12% organelle/mitochondria
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
pair_completeness 0.681771369721936
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.065523576240049
satellite_probability 3.61310993287569e-18
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 8 0.00122
TatII Ty3-RT TatII Ty3-RT 1 0.00015

clusters with similarity:

Cluster Number of similarity hits
11 1
24 1
130 1
141 1
173 1
189 1
213 1
279 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
279 43 0.0504
7 18 0.00358
284 11 0.0139
11 7 0.00172
126 7 0.00406
20 5 0.00126
162 5 0.00283
213 5 0.00297
2 4 0.000659
6 4 0.000927
17 4 0.000639
31 4 0.000725
40 4 0.000979
47 4 0.00132
3220 4 0.00644
4610 4 0.00643
8100 4 0.00644
32900 4 0.00645
36400 4 0.00645
4 3 0.00076
9 3 0.000944
19 3 0.00123
21 3 0.00104
22 3 0.000922
24 3 0.000835
45 3 0.000937
48 3 0.000797
63 3 0.000851
67 3 0.00111
81 3 0.00107
99 3 0.00235
130 3 0.00115
150 3 0.00191
152 3 0.00129
180 3 0.00295
362 3 0.00439
6180 3 0.00483
3 2 0.000481
14 2 0.000516
15 2 0.000686
16 2 0.000649
25 2 0.000837
29 2 0.000846
34 2 0.000687
43 2 0.000638
44 2 0.000566
49 2 0.000886
53 2 0.000586
55 2 0.00047
73 2 0.00139
90 2 0.000675
102 2 0.00069
138 2 0.0015
145 2 0.001
158 2 0.00129
161 2 0.00105
179 2 0.00166
181 2 0.00148
189 2 0.00128
197 2 0.00132
229 2 0.00163
245 2 0.00165
313 2 0.0027
2660 2 0.0032
2830 2 0.00321
2920 2 0.00322
8730 2 0.00322
9680 2 0.00322
20500 2 0.00323
38000 2 0.00323
44600 2 0.00323
76200 2 0.00323
81800 2 0.00323
117000 2 0.00323
130000 2 0.00323
132000 2 0.00323
145000 2 0.00323
145000 2 0.00323
192000 2 0.00323
201000 2 0.00323
210000 2 0.00323
223000 2 0.00323
223000 2 0.00323
254000 2 0.00323
275000 2 0.00323
296000 2 0.00323
319000 2 0.00323
1 1 0.000247
8 1 0.000464
10 1 0.000514
18 1 0.00042
23 1 0.000346
26 1 0.000381
27 1 0.000528
28 1 0.000501
33 1 0.00053
38 1 0.000563
41 1 0.000286
51 1 0.000294
52 1 0.000417
56 1 0.00119
57 1 0.000619
59 1 0.000598
60 1 0.000606
64 1 0.00068
69 1 0.00061
72 1 0.000541
74 1 0.000493
78 1 0.000327
80 1 0.000519
83 1 0.000565
85 1 0.000524
92 1 0.000824
93 1 0.000732
96 1 0.00063
105 1 0.000492
110 1 0.000682
115 1 0.000429
118 1 0.000715
123 1 0.000617
127 1 0.000561
139 1 0.000591
140 1 0.000398
141 1 0.000545
142 1 0.000703
146 1 0.000749
147 1 0.000313
148 1 0.00061
156 1 0.000695
167 1 0.000519
170 1 0.000599
171 1 0.000691
172 1 0.000568
173 1 0.00091
174 1 0.000601
194 1 0.00126
205 1 0.000806
206 1 0.000938
212 1 0.00106
216 1 0.00113
221 1 0.00117
234 1 0.00129
238 1 0.00111
239 1 0.00108
243 1 0.000829
258 1 0.000879
273 1 0.000956
276 1 0.000998
281 1 0.00143
285 1 0.00134
309 1 0.00151
323 1 0.00146
355 1 0.00145
357 1 0.00143
364 1 0.00146
397 1 0.00147
464 1 0.00152
567 1 0.00152
612 1 0.00158
633 1 0.00156
688 1 0.00153
1180 1 0.00159
1300 1 0.00158
2060 1 0.00159
2380 1 0.0016
2650 1 0.00159
2750 1 0.00161
2770 1 0.00159
7000 1 0.00161
7570 1 0.00161
7620 1 0.00161
8460 1 0.00161
9600 1 0.00161
10000 1 0.00161
11500 1 0.00161
15000 1 0.00161
16300 1 0.00161
17700 1 0.00161
19000 1 0.00162
19400 1 0.00161
20400 1 0.00161
23900 1 0.00162
24000 1 0.00162
25400 1 0.00161
26100 1 0.00161
27600 1 0.00161
28300 1 0.00162
30700 1 0.00161
33000 1 0.00161
36500 1 0.00162
38800 1 0.00162
40400 1 0.00161
46400 1 0.00162
47400 1 0.00162
52000 1 0.00162
52000 1 0.00162
52900 1 0.00161
54000 1 0.00162
57800 1 0.00161
60100 1 0.00161
61000 1 0.00162
63000 1 0.00162
63300 1 0.00161
65700 1 0.00161
66200 1 0.00161
67200 1 0.00161
68600 1 0.00162
73100 1 0.00161
73400 1 0.00162
74900 1 0.00162
76400 1 0.00162
81100 1 0.00162
83900 1 0.00161
94800 1 0.00162
102000 1 0.00162
106000 1 0.00162
108000 1 0.00162
109000 1 0.00162
120000 1 0.00162
120000 1 0.00162
122000 1 0.00162
124000 1 0.00162
145000 1 0.00162
150000 1 0.00162
167000 1 0.00162
175000 1 0.00162
187000 1 0.00162
190000 1 0.00162
191000 1 0.00162
197000 1 0.00162
197000 1 0.00162
204000 1 0.00162
206000 1 0.00162
212000 1 0.00162
213000 1 0.00162
213000 1 0.00162
220000 1 0.00162
229000 1 0.00162
233000 1 0.00162
239000 1 0.00162
245000 1 0.00162
250000 1 0.00162
253000 1 0.00162
257000 1 0.00162
258000 1 0.00162
268000 1 0.00162
282000 1 0.00162
290000 1 0.00162
299000 1 0.00162
308000 1 0.00162
324000 1 0.00162
327000 1 0.00162
328000 1 0.00162
333000 1 0.00162
344000 1 0.00162

CL187 ----> CL279

image

No. of shared pairs: :43

CL187 ----> CL7

image

No. of shared pairs: :18

CL187 ----> CL284

image

No. of shared pairs: :11