Cluster no. 189

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Cluster is part of supercluster: 98

Cluster characteristics:

size 6318
size_real 6318
ecount 337315
supercluster 98
annotations_summary 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.539098660170524
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00617861823628534
satellite_probability 5.9149989235368e-21
consensus None
TAREAN_annotation Other
orientation_score 0.97655067725362

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-INT CRM Ty3-INT 2 0.00032
CRM Ty3-RH CRM Ty3-RH 1 0.00016
Tekay Ty3-RT Tekay Ty3-RT 1 0.00016

clusters with similarity:

Cluster Number of similarity hits
234 14
213 4
7 3
24 1
30 1
44 1
66 1
81 1
90 1
119 1
127 1
134 1
187 1
282 1
290 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
20 16 0.00373
2 15 0.00234
7 14 0.00261
172 11 0.00526
234 11 0.00995
47 10 0.00298
17 9 0.00137
150 9 0.00473
23 8 0.00249
34 8 0.00247
44 8 0.00207
15 7 0.00216
26 7 0.00237
45 7 0.00198
66 7 0.0019
81 7 0.00224
196 7 0.00353
3 6 0.00134
48 6 0.00147
126 6 0.00292
161 6 0.00269
6 5 0.00108
11 5 0.00114
21 5 0.00156
54 5 0.00262
63 5 0.0013
90 5 0.00152
115 5 0.00188
24 4 0.00102
30 4 0.000896
31 4 0.000684
88 4 0.00125
89 4 0.0018
98 4 0.00221
139 4 0.00198
162 4 0.00191
167 4 0.00177
213 4 0.00199
247 4 0.00279
6300 4 0.00422
12 3 0.000612
18 3 0.00111
22 3 0.000837
40 3 0.00068
41 3 0.000783
51 3 0.000804
61 3 0.00119
78 3 0.000886
99 3 0.00187
122 3 0.00141
134 3 0.00138
145 3 0.00129
168 3 0.00145
170 3 0.0015
178 3 0.00214
181 3 0.00179
223 3 0.00236
229 3 0.00193
235 3 0.0019
245 3 0.00194
255 3 0.00217
8 2 0.000805
9 2 0.000571
13 2 0.000848
19 2 0.000723
25 2 0.000736
28 2 0.000861
32 2 0.000843
35 2 0.00049
36 2 0.000819
39 2 0.000854
42 2 0.000744
53 2 0.000535
67 2 0.000659
74 2 0.000849
76 2 0.000889
85 2 0.000895
86 2 0.000599
104 2 0.00114
113 2 0.000909
130 2 0.00068
133 2 0.000549
143 2 0.000948
147 2 0.000568
151 2 0.0011
177 2 0.00145
182 2 0.00117
186 2 0.000911
187 2 0.00128
244 2 0.0019
276 2 0.0015
313 2 0.00187
331 2 0.00188
430 2 0.00195
434 2 0.00196
494 2 0.00201
536 2 0.00201
11900 2 0.00211
13000 2 0.00211
58000 2 0.00211
73300 2 0.00211
75800 2 0.00211
147000 2 0.00211
172000 2 0.00211
176000 2 0.00211
252000 2 0.00211
14 1 0.000238
16 1 0.000293
27 1 0.00045
29 1 0.000371
33 1 0.000452
37 1 0.000252
50 1 0.000396
52 1 0.000367
55 1 0.000218
56 1 0.000857
59 1 5e-04
64 1 0.000556
69 1 0.000509
71 1 0.000319
83 1 0.000477
91 1 0.000626
92 1 0.000649
101 1 0.000412
102 1 0.00031
103 1 0.000345
105 1 0.000424
106 1 0.000433
107 1 0.000614
111 1 0.000291
114 1 0.00064
116 1 0.000339
119 1 0.000678
120 1 0.000453
123 1 0.000513
124 1 0.00055
127 1 0.000474
131 1 0.000831
132 1 0.000596
140 1 0.000352
141 1 0.000462
148 1 0.000508
152 1 0.000377
153 1 0.000451
154 1 0.000675
159 1 0.000578
163 1 0.000454
165 1 0.000475
174 1 0.000502
183 1 0.000587
185 1 0.000581
191 1 0.000536
193 1 0.000719
200 1 0.000564
214 1 0.000796
217 1 0.000689
219 1 0.000805
232 1 0.000749
238 1 0.000815
242 1 0.000713
249 1 0.000841
256 1 0.000846
265 1 0.000936
273 1 0.000728
274 1 0.000975
285 1 0.000931
290 1 0.00099
318 1 0.000885
319 1 0.000935
324 1 0.000912
354 1 0.00096
356 1 0.000962
386 1 0.00101
404 1 0.00102
439 1 0.00102
446 1 0.000991
460 1 0.001
465 1 0.001
518 1 0.001
527 1 0.00104
549 1 0.00101
590 1 0.00102
604 1 0.00102
609 1 0.00103
618 1 0.00102
667 1 0.00104
714 1 0.00105
812 1 0.00103
868 1 0.00105
907 1 0.00104
1010 1 0.00103
1140 1 0.00104
1170 1 0.00104
1430 1 0.00104
1680 1 0.00105
1840 1 0.00104
2130 1 0.00105
2180 1 0.00105
2230 1 0.00105
2270 1 0.00105
2320 1 0.00105
2470 1 0.00105
2680 1 0.00105
2990 1 0.00105
3490 1 0.00105
3680 1 0.00105
3710 1 0.00105
3810 1 0.00105
3830 1 0.00105
3860 1 0.00105
3950 1 0.00105
5350 1 0.00105
5730 1 0.00105
6500 1 0.00105
6720 1 0.00105
7860 1 0.00105
7890 1 0.00105
7910 1 0.00105
7940 1 0.00105
8090 1 0.00105
8220 1 0.00105
9740 1 0.00105
10100 1 0.00105
10200 1 0.00105
10200 1 0.00105
10300 1 0.00106
11700 1 0.00105
12500 1 0.00105
15600 1 0.00105
19900 1 0.00106
22300 1 0.00106
22900 1 0.00106
23100 1 0.00106
23100 1 0.00106
23900 1 0.00106
24300 1 0.00106
24300 1 0.00105
24400 1 0.00105
27100 1 0.00106
27300 1 0.00105
27600 1 0.00105
28500 1 0.00105
29700 1 0.00105
35200 1 0.00106
36400 1 0.00105
36800 1 0.00106
38000 1 0.00106
43000 1 0.00105
45200 1 0.00105
49700 1 0.00106
50000 1 0.00106
50000 1 0.00106
50200 1 0.00106
50900 1 0.00106
54500 1 0.00106
55000 1 0.00106
56500 1 0.00106
61500 1 0.00106
61900 1 0.00106
62800 1 0.00106
65900 1 0.00106
66600 1 0.00106
70000 1 0.00106
71500 1 0.00106
71500 1 0.00106
75200 1 0.00106
76900 1 0.00106
79900 1 0.00106
81400 1 0.00106
83100 1 0.00106
83500 1 0.00106
94000 1 0.00106
94500 1 0.00106
98800 1 0.00106
101000 1 0.00106
124000 1 0.00106
127000 1 0.00106
127000 1 0.00106
128000 1 0.00106
129000 1 0.00106
131000 1 0.00106
144000 1 0.00106
163000 1 0.00106
163000 1 0.00106
167000 1 0.00106
171000 1 0.00106
183000 1 0.00106
185000 1 0.00106
186000 1 0.00106
194000 1 0.00106
197000 1 0.00106
207000 1 0.00106
209000 1 0.00106
209000 1 0.00106
211000 1 0.00106
212000 1 0.00106
217000 1 0.00106
225000 1 0.00106
226000 1 0.00106
227000 1 0.00106
232000 1 0.00106
257000 1 0.00106
269000 1 0.00106
292000 1 0.00106
294000 1 0.00106
296000 1 0.00106
298000 1 0.00106
310000 1 0.00106
320000 1 0.00106
333000 1 0.00106
335000 1 0.00106
338000 1 0.00106
348000 1 0.00106
349000 1 0.00106

CL189 ----> CL20

image

No. of shared pairs: :16

CL189 ----> CL2

image

No. of shared pairs: :15

CL189 ----> CL7

image

No. of shared pairs: :14

CL189 ----> CL172

image

No. of shared pairs: :11

CL189 ----> CL234

image

No. of shared pairs: :11

CL189 ----> CL47

image

No. of shared pairs: :10