Cluster no. 190

Cluster no. 190

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Cluster is part of supercluster: 1

Cluster characteristics:

size	6297
size_real	6297
ecount	622929
supercluster	1
annotations_summary	0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
pair_completeness	0.617518623169792
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.0316023503255519
satellite_probability	8.45426015332044e-20
consensus	None
TAREAN_annotation	Other
orientation_score	1

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Reina Ty3-PROT Reina Ty3-PROT 1 0.00016

clusters with similarity:

Cluster	Number of similarity hits

55	28200
43	3180
53	1050
175	609
117	43

clusters connected through mates:

Cluster	Number of shared read pairs	k

55	619	0.141
175	324	0.246
43	249	0.0763
72	12	0.00608
53	8	0.00226
67	8	0.00282
102	4	0.00132
117	4	0.00212
69	3	0.0017
12300	3	0.00401
9	2	0.000605
14	2	0.000499
18	2	0.000798
21	2	0.000667
23	2	0.000663
26	2	0.000728
27	2	0.00099
29	2	0.000803
34	2	0.000658
39	2	0.000935
40	2	0.000475
41	2	0.000551
59	2	0.00111
81	2	0.000684
88	2	0.000668
108	2	0.00131
133	2	0.000581
156	2	0.00128
227	2	0.00192
150000	2	0.00268
245000	2	0.00268
324000	2	0.00268
1	1	0.00024
2	1	0.000161
3	1	0.000234
4	1	0.000245
5	1	0.000442
8	1	0.000438
11	1	0.000238
19	1	0.00039
22	1	0.000296
24	1	0.000269
30	1	0.000235
31	1	0.000177
33	1	0.000497
37	1	0.000265
44	1	0.000273
45	1	3e-04
50	1	0.00043
52	1	0.000396
56	1	0.00104
61	1	0.00043
66	1	0.000288
73	1	0.00064
79	1	0.000324
80	1	0.000487
84	1	0.000444
85	1	0.000492
87	1	0.000496
89	1	0.000494
91	1	0.000716
92	1	0.000746
97	1	0.000442
99	1	0.000713
101	1	0.00045
104	1	0.000646
125	1	0.000678
127	1	0.000524
130	1	0.000365
135	1	0.000593
137	1	0.000602
140	1	0.000379
148	1	0.000566
154	1	0.000782
174	1	0.000559
179	1	0.00075
182	1	0.00066
193	1	0.000841
208	1	0.00088
211	1	0.000803
213	1	0.000552
222	1	0.000903
232	1	0.000882
243	1	0.00075
250	1	0.00111
256	1	0.00102
265	1	0.00115
274	1	0.00121
403	1	0.00122
483	1	0.00128
683	1	0.0013
1200	1	0.00131
3780	1	0.00134
6970	1	0.00134
7380	1	0.00134
11000	1	0.00134
13300	1	0.00134
27800	1	0.00134
29600	1	0.00134
52800	1	0.00134
57800	1	0.00134
138000	1	0.00134
140000	1	0.00134
143000	1	0.00134
189000	1	0.00134
199000	1	0.00134
218000	1	0.00134
238000	1	0.00134
257000	1	0.00134
258000	1	0.00134
295000	1	0.00134
302000	1	0.00134

CL190 ----> CL55

No. of shared pairs: :619

CL190 ----> CL175

No. of shared pairs: :324

CL190 ----> CL43

No. of shared pairs: :249

CL190 ----> CL72

No. of shared pairs: :12