Cluster no. 191

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Cluster is part of supercluster: 99

Cluster characteristics:

size 6197
size_real 6197
ecount 43454
supercluster 99
annotations_summary 5.49% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
2.76% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
pair_completeness 0.54192585220204
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00129094723253187
satellite_probability 1.65508917325132e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-CHDII CRM Ty3-CHDII 171 0.028
CRM Ty3-INT CRM Ty3-INT 340 0.055

clusters with similarity:

Cluster Number of similarity hits
100 19
158 10
22 4
31 1
44 1
71 1
142 1
148 1
208 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
158 152 0.0819
22 62 0.0174
100 53 0.0289
1790 15 0.016
16 12 0.00355
3540 9 0.0097
3660 8 0.00862
1570 7 0.00749
2750 7 0.00754
31 6 0.00103
221 6 0.00519
26 5 0.00171
54 5 0.00265
1350 5 0.00538
2260 5 0.00536
3520 5 0.0054
4970 5 0.00541
5170 5 0.0054
3 4 0.000898
15 4 0.00124
17 4 0.000609
36 4 0.00166
49 4 0.00156
118 4 0.00235
2460 4 0.0043
2920 4 0.00431
6420 4 0.00433
19100 4 0.00433
9 3 0.000862
14 3 0.000718
18 3 0.00112
21 3 0.000945
30 3 0.000676
32 3 0.00128
44 3 0.000782
50 3 0.0012
67 3 0.000997
75 3 0.000784
76 3 0.00135
86 3 0.000905
89 3 0.00136
116 3 0.00103
126 3 0.00148
130 3 0.00103
171 3 0.00172
474 3 0.00311
2120 3 0.00323
4010 3 0.00323
5750 3 0.00324
6030 3 0.00324
6290 3 0.00324
9920 3 0.00325
10300 3 0.00324
10900 3 0.00325
15900 3 0.00325
23500 3 0.00325
27000 3 0.00325
33600 3 0.00325
42300 3 0.00325
68700 3 0.00325
6 2 0.000433
19 2 0.00073
25 2 0.000743
29 2 0.00075
38 2 0.000962
47 2 6e-04
63 2 0.000522
64 2 0.00113
78 2 0.000595
96 2 0.00106
97 2 0.00082
105 2 0.000856
106 2 0.000875
117 2 0.000968
134 2 0.000932
139 2 0.001
148 2 0.00103
152 2 0.000761
154 2 0.00137
157 2 0.00119
161 2 0.000907
162 2 0.000966
169 2 0.00122
177 2 0.00148
208 2 0.00152
213 2 0.00101
246 2 0.002
275 2 0.00203
2240 2 0.00216
5960 2 0.00217
6670 2 0.00216
7810 2 0.00216
8670 2 0.00216
8820 2 0.00217
9650 2 0.00217
10500 2 0.00216
11400 2 0.00216
11700 2 0.00217
11900 2 0.00217
13400 2 0.00217
13600 2 0.00217
13700 2 0.00217
14500 2 0.00217
18200 2 0.00217
21000 2 0.00217
21000 2 0.00217
24400 2 0.00217
24400 2 0.00217
29900 2 0.00217
32500 2 0.00217
36900 2 0.00217
38900 2 0.00217
39600 2 0.00217
44600 2 0.00217
46300 2 0.00217
47800 2 0.00217
49400 2 0.00217
56700 2 0.00217
63200 2 0.00217
66500 2 0.00217
69100 2 0.00217
73000 2 0.00217
79200 2 0.00217
80200 2 0.00217
83800 2 0.00217
84700 2 0.00217
96600 2 0.00217
116000 2 0.00217
137000 2 0.00217
143000 2 0.00217
144000 2 0.00217
148000 2 0.00217
164000 2 0.00217
175000 2 0.00217
205000 2 0.00217
208000 2 0.00217
209000 2 0.00217
210000 2 0.00217
217000 2 0.00217
217000 2 0.00217
223000 2 0.00217
223000 2 0.00217
235000 2 0.00217
258000 2 0.00217
279000 2 0.00217
282000 2 0.00217
306000 2 0.00217
2 1 0.000157
4 1 0.000235
5 1 0.00041
7 1 0.000187
10 1 0.000445
11 1 0.000229
12 1 0.000205
13 1 0.000429
20 1 0.000234
24 1 0.000257
28 1 0.000435
33 1 0.000457
34 1 0.000311
35 1 0.000246
37 1 0.000254
40 1 0.000228
42 1 0.000375
43 1 0.000291
45 1 0.000285
48 1 0.000246
51 1 0.00027
56 1 0.000876
58 1 0.00058
59 1 0.000506
62 1 0.000284
68 1 0.00043
71 1 0.000321
74 1 0.000429
77 1 0.000467
79 1 0.000307
80 1 0.000449
81 1 0.000322
83 1 0.000482
84 1 0.000412
93 1 0.000599
98 1 0.000561
99 1 0.000634
101 1 0.000417
110 1 0.000565
111 1 0.000293
112 1 0.00064
113 1 0.00046
114 1 0.00065
123 1 0.00052
127 1 0.00048
128 1 0.000622
136 1 0.00067
138 1 0.000612
147 1 0.000286
150 1 0.000533
151 1 0.000559
160 1 0.000571
164 1 0.000884
167 1 0.000448
168 1 0.000488
170 1 0.000507
176 1 0.000714
180 1 0.000758
181 1 0.000605
182 1 0.000592
189 1 0.000536
195 1 0.00078
199 1 0.000844
200 1 0.000572
224 1 0.000995
228 1 0.000867
229 1 0.000654
232 1 0.000764
235 1 0.000645
239 1 0.000817
245 1 0.000659
250 1 0.000931
253 1 0.000772
267 1 0.000773
270 1 0.00104
277 1 0.000952
279 1 0.000865
281 1 0.001
285 1 0.000953
317 1 0.00103
323 1 0.00101
346 1 0.001
416 1 0.00105
466 1 0.00104
525 1 0.00105
806 1 0.00106
1040 1 0.00108
1150 1 0.00108
1530 1 0.00107
1580 1 0.00108
1670 1 0.00107
1740 1 0.00107
1980 1 0.00107
2230 1 0.00108
2250 1 0.00108
2320 1 0.00108
3190 1 0.00108
3330 1 0.00108
3910 1 0.00108
3960 1 0.00108
4030 1 0.00108
4290 1 0.00108
4380 1 0.00108
5180 1 0.00108
5450 1 0.00108
5880 1 0.00108
6050 1 0.00108
7550 1 0.00108
7990 1 0.00108
8280 1 0.00108
8280 1 0.00108
8450 1 0.00108
8900 1 0.00108
11700 1 0.00108
12100 1 0.00108
12600 1 0.00108
12800 1 0.00108
12800 1 0.00108
13800 1 0.00109
13900 1 0.00108
14100 1 0.00108
15600 1 0.00108
16600 1 0.00108
16900 1 0.00108
18300 1 0.00108
19000 1 0.00108
19300 1 0.00108
19800 1 0.00108
20600 1 0.00108
20900 1 0.00109
21000 1 0.00108
21100 1 0.00108
21200 1 0.00108
22000 1 0.00108
22500 1 0.00108
24500 1 0.00108
24600 1 0.00108
24900 1 0.00109
25000 1 0.00108
25100 1 0.00108
26000 1 0.00108
26500 1 0.00108
27700 1 0.00108
29000 1 0.00108
29100 1 0.00108
30200 1 0.00109
30400 1 0.00109
32000 1 0.00109
32800 1 0.00108
32900 1 0.00109
33400 1 0.00109
34200 1 0.00108
35400 1 0.00109
35500 1 0.00108
37900 1 0.00108
38100 1 0.00109
39200 1 0.00109
41200 1 0.00109
41400 1 0.00109
42800 1 0.00109
44500 1 0.00109
45800 1 0.00109
45800 1 0.00109
47700 1 0.00109
49200 1 0.00108
49600 1 0.00108
53600 1 0.00109
56100 1 0.00109
57200 1 0.00108
58000 1 0.00109
58600 1 0.00108
58900 1 0.00108
59100 1 0.00109
60300 1 0.00109
60500 1 0.00109
61200 1 0.00108
61800 1 0.00108
62200 1 0.00108
64200 1 0.00109
64600 1 0.00109
65200 1 0.00109
65600 1 0.00108
65900 1 0.00108
70200 1 0.00108
74000 1 0.00108
74500 1 0.00109
75100 1 0.00108
75400 1 0.00109
75700 1 0.00108
75800 1 0.00108
78100 1 0.00108
80900 1 0.00108
81700 1 0.00108
82100 1 0.00109
82300 1 0.00109
83500 1 0.00109
84500 1 0.00109
85100 1 0.00109
86500 1 0.00109
87800 1 0.00109
94400 1 0.00109
101000 1 0.00109
103000 1 0.00109
104000 1 0.00109
105000 1 0.00109
108000 1 0.00109
110000 1 0.00109
117000 1 0.00109
119000 1 0.00109
119000 1 0.00109
124000 1 0.00109
126000 1 0.00109
128000 1 0.00109
129000 1 0.00109
129000 1 0.00109
131000 1 0.00109
134000 1 0.00109
135000 1 0.00109
139000 1 0.00109
140000 1 0.00109
143000 1 0.00109
155000 1 0.00109
157000 1 0.00109
158000 1 0.00109
158000 1 0.00109
160000 1 0.00109
161000 1 0.00109
161000 1 0.00109
162000 1 0.00109
165000 1 0.00109
172000 1 0.00109
173000 1 0.00109
175000 1 0.00109
179000 1 0.00109
180000 1 0.00109
186000 1 0.00109
187000 1 0.00109
197000 1 0.00109
202000 1 0.00109
202000 1 0.00109
208000 1 0.00109
213000 1 0.00109
213000 1 0.00109
222000 1 0.00109
222000 1 0.00109
222000 1 0.00109
223000 1 0.00109
223000 1 0.00109
230000 1 0.00109
232000 1 0.00109
233000 1 0.00109
234000 1 0.00109
234000 1 0.00109
240000 1 0.00109
244000 1 0.00109
250000 1 0.00109
251000 1 0.00109
259000 1 0.00109
260000 1 0.00109
260000 1 0.00109
262000 1 0.00109
264000 1 0.00109
276000 1 0.00109
280000 1 0.00109
286000 1 0.00109
286000 1 0.00109
288000 1 0.00109
292000 1 0.00109
293000 1 0.00109
294000 1 0.00109
297000 1 0.00109
299000 1 0.00109
302000 1 0.00109
304000 1 0.00109
309000 1 0.00109
309000 1 0.00109
310000 1 0.00109
312000 1 0.00109
312000 1 0.00109
316000 1 0.00109
316000 1 0.00109
319000 1 0.00109
322000 1 0.00109
325000 1 0.00109
328000 1 0.00109
334000 1 0.00109
335000 1 0.00109
337000 1 0.00109
340000 1 0.00109
342000 1 0.00109
343000 1 0.00109
347000 1 0.00109

CL191 ----> CL158

image

No. of shared pairs: :152

CL191 ----> CL22

image

No. of shared pairs: :62

CL191 ----> CL100

image

No. of shared pairs: :53

CL191 ----> CL1791

image

No. of shared pairs: :15

CL191 ----> CL16

image

No. of shared pairs: :12