Cluster no. 192

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Cluster is part of supercluster: 30

Cluster characteristics:

size 6143
size_real 6143
ecount 121118
supercluster 30
annotations_summary 99.95% organelle/plastid
pair_completeness 0.930546825895663
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000162786911932281
satellite_probability 1.56020511944627e-24
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 6140 1

clusters with similarity:

Cluster Number of similarity hits
246 14
262 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
246 27 0.141
131 4 0.0109
2 3 0.000539
6 3 0.000788
1 2 0.000566
4 2 0.000581
8 2 0.00121
18 2 0.00107
21 2 0.000846
23 2 0.00084
28 2 0.00134
30 2 0.000551
34 2 0.000832
38 2 0.00158
61 2 0.00118
109 2 0.00254
126 2 0.00164
188 2 0.00924
262 2 0.0122
275 2 0.0115
7 1 0.000221
9 1 0.000375
13 1 0.000657
15 1 0.000415
16 1 0.000389
19 1 0.000518
22 1 0.000364
24 1 0.000324
25 1 0.000532
32 1 0.000651
39 1 0.000664
45 1 0.000371
47 1 0.000396
49 1 0.000572
50 1 0.000591
53 1 0.000344
57 1 0.000903
59 1 0.000858
64 1 0.00104
67 1 0.000455
68 1 0.000661
73 1 0.00108
75 1 0.000331
79 1 0.000408
83 1 0.000792
89 1 0.00072
90 1 0.000408
94 1 0.00247
95 1 0.000964
96 1 0.000927
104 1 0.00109
105 1 0.000656
108 1 0.00112
124 1 0.00102
134 1 0.000749
137 1 0.000972
141 1 0.000753
142 1 0.00109
143 1 0.000785
150 1 0.000937
154 1 0.00155
164 1 0.00312
166 1 0.00129
193 1 0.0018
196 1 0.000873
217 1 0.00162
221 1 0.00289
224 1 0.00513
242 1 0.00176
256 1 0.00288
309 1 0.00654
317 1 0.00635
644 1 0.00709
674 1 0.00772
938 1 0.00791
1010 1 0.00797
1310 1 0.00791
3530 1 0.00866
4930 1 0.0087
5310 1 0.00881
16800 1 0.00889
20800 1 0.00889
22200 1 0.00893
35800 1 0.00897
44800 1 0.00889
51900 1 0.00901
65100 1 0.00893
82700 1 0.00893
108000 1 0.00897
153000 1 0.00897
222000 1 0.00897
225000 1 0.00897
246000 1 0.00897
272000 1 0.00897
307000 1 0.00897
331000 1 0.00897
339000 1 0.00897
347000 1 0.00897

CL192 ----> CL246

image

No. of shared pairs: :27