Cluster no. 193

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Cluster is part of supercluster: 85

Cluster characteristics:

size 6080
size_real 6080
ecount 60884
supercluster 85
annotations_summary
pair_completeness 0.744619799139168
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00427631578947368
satellite_probability 8.20691448488047e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
29 172
13 37
278 2
31 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
13 176 0.0948
29 110 0.0502
278 69 0.12
695 31 0.0658
268 17 0.0244
369 9 0.0185
3480 9 0.02
96 7 0.00495
4120 7 0.0155
4670 7 0.0155
4540 5 0.0111
5000 5 0.0111
10200 5 0.0111
72 4 0.00239
40900 4 0.00895
23 3 0.0011
30 3 0.000757
31 3 0.000561
32 3 0.0016
33 3 0.00175
34 3 0.0011
22600 3 0.0067
27400 3 0.00672
33700 3 0.00671
1 2 0.000517
2 2 0.000339
11 2 0.000514
15 2 0.000729
22 2 0.000649
48 2 0.000557
59 2 0.00133
86 2 0.000704
92 2 0.00192
107 2 0.00177
126 2 0.00129
129 2 0.00196
130 2 0.00082
5270 2 0.00445
9970 2 0.00447
10100 2 0.00447
14600 2 0.00447
15100 2 0.00447
19100 2 0.00447
20400 2 0.00448
21700 2 0.00447
25600 2 0.00448
39200 2 0.00448
41600 2 0.00447
42500 2 0.00447
43600 2 0.00448
44600 2 0.00447
68000 2 0.00448
80500 2 0.00448
82000 2 0.00448
83600 2 0.00448
125000 2 0.00448
135000 2 0.00448
160000 2 0.00448
162000 2 0.00448
178000 2 0.00448
205000 2 0.00448
211000 2 0.00448
6 1 0.000242
8 1 0.000504
10 1 0.000564
12 1 0.000227
17 1 0.000164
19 1 0.000441
24 1 0.000292
25 1 0.000451
26 1 0.000408
35 1 0.000279
39 1 0.000543
44 1 0.000297
45 1 0.00033
47 1 0.00035
49 1 0.00048
50 1 0.000494
52 1 0.00045
53 1 0.000309
55 1 0.000245
63 1 0.000298
67 1 0.000395
69 1 0.000682
74 1 0.000539
77 1 6e-04
80 1 0.00057
94 1 0.00135
95 1 0.000729
102 1 0.000367
118 1 0.000816
121 1 0.00106
125 1 0.00085
131 1 0.00142
133 1 0.000318
157 1 0.000832
162 1 0.000627
171 1 0.000785
174 1 0.000671
175 1 0.000982
184 1 0.00118
189 1 0.000719
190 1 0.000841
192 1 0.0018
194 1 0.00161
197 1 0.000745
209 1 0.00155
210 1 0.00168
212 1 0.00129
213 1 0.000661
231 1 0.00159
259 1 0.00153
260 1 0.00156
314 1 0.00174
342 1 0.00191
345 1 0.00169
1400 1 0.00217
2040 1 0.00223
2240 1 0.0022
2350 1 0.0022
3750 1 0.00221
6060 1 0.00224
9720 1 0.00223
9770 1 0.00223
11100 1 0.00223
11100 1 0.00223
14600 1 0.00224
16200 1 0.00223
16400 1 0.00223
17400 1 0.00223
17500 1 0.00224
19000 1 0.00224
19500 1 0.00223
22000 1 0.00224
22600 1 0.00224
23400 1 0.00224
28000 1 0.00224
28500 1 0.00223
33100 1 0.00224
33600 1 0.00224
37500 1 0.00224
38300 1 0.00224
38500 1 0.00224
38600 1 0.00224
41800 1 0.00224
42800 1 0.00224
43600 1 0.00224
44600 1 0.00224
50100 1 0.00224
50400 1 0.00224
51800 1 0.00224
54800 1 0.00224
56500 1 0.00224
57700 1 0.00224
58600 1 0.00224
64200 1 0.00224
65900 1 0.00224
68600 1 0.00224
69700 1 0.00224
70500 1 0.00224
70900 1 0.00224
71400 1 0.00224
78200 1 0.00224
78400 1 0.00224
83000 1 0.00224
96100 1 0.00224
132000 1 0.00224
143000 1 0.00224
168000 1 0.00224
173000 1 0.00224
178000 1 0.00224
181000 1 0.00224
184000 1 0.00224
187000 1 0.00224
203000 1 0.00224
206000 1 0.00224
233000 1 0.00224
234000 1 0.00224
237000 1 0.00224
240000 1 0.00224
250000 1 0.00224
269000 1 0.00224
280000 1 0.00224
313000 1 0.00224
316000 1 0.00224
317000 1 0.00224
329000 1 0.00224
330000 1 0.00224
336000 1 0.00224

CL193 ----> CL13

image

No. of shared pairs: :176

CL193 ----> CL29

image

No. of shared pairs: :110

CL193 ----> CL278

image

No. of shared pairs: :69

CL193 ----> CL695

image

No. of shared pairs: :31

CL193 ----> CL268

image

No. of shared pairs: :17