Cluster no. 194

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Cluster is part of supercluster: 28

Cluster characteristics:

size 6013
size_real 6013
ecount 322706
supercluster 28
annotations_summary 38.12% 45S_rDNA/18S_rDNA
6.62% 45S_rDNA/25S_rDNA
2.68% 45S_rDNA/5.8S_rDNA
0.03% organelle/mitochondria
0.02% 5S_rDNA/5S_rDNA
pair_completeness 0.889098334904178
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.179777149509396
satellite_probability 6.88615157704051e-15
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
18S_rDNA 18S_rDNA 2292 0.38117
25S_rDNA 25S_rDNA 398 0.06619
5.8S_rDNA 5.8S_rDNA 161 0.02678
5S_rDNA 5S_rDNA 1 0.00017
mitochondria mitochondria 2 0.00033

clusters with similarity:

Cluster Number of similarity hits
244 191
210 159
164 4

clusters connected through mates:

Cluster Number of shared
read pairs
k
244 55 0.194
210 52 0.16
164 16 0.0413
2 5 0.000888
4 5 0.00143
24 4 0.00127
54 3 0.00263
63 3 0.000972
49300 3 0.0169
71100 3 0.0169
1 2 0.000555
14 2 0.000582
31 2 0.000394
35 2 0.000603
59 2 0.00162
64 2 0.00194
65 2 0.0014
67 2 0.000883
72 2 0.00142
84 2 0.00119
98 2 0.00193
107 2 0.00233
122 2 0.00147
206 2 0.0032
5 1 0.000589
9 1 0.000366
11 1 0.000276
16 1 0.000379
18 1 0.000516
19 1 0.000501
20 1 0.000284
22 1 0.000355
23 1 0.000408
26 1 0.000459
28 1 0.000643
30 1 0.000271
32 1 0.000624
36 1 0.000598
37 1 0.000313
38 1 0.000749
40 1 0.000274
45 1 0.000362
47 1 0.000386
50 1 0.000569
51 1 0.000337
52 1 0.000511
53 1 0.000336
55 1 0.000262
61 1 0.000569
66 1 0.000344
68 1 0.000633
73 1 0.00101
74 1 0.000631
78 1 0.000382
80 1 0.000673
86 1 0.000389
88 1 0.000412
91 1 0.00121
94 1 0.00213
100 1 0.000917
102 1 0.000407
104 1 0.00102
108 1 0.00104
110 1 0.000976
112 1 0.00122
121 1 0.00148
124 1 0.000955
128 1 0.00116
129 1 0.00133
135 1 0.000894
136 1 0.00134
141 1 0.000718
142 1 0.00102
144 1 0.00149
147 1 0.000364
152 1 0.000531
156 1 0.001
167 1 0.000672
174 1 0.000818
176 1 0.00152
178 1 0.00157
186 1 0.000701
187 1 0.00126
193 1 0.00161
198 1 0.00173
201 1 0.0036
202 1 0.00207
211 1 0.00147
217 1 0.00147
219 1 0.00211
231 1 0.00277
233 1 0.00303
234 1 0.00297
237 1 0.00204
261 1 0.00443
267 1 0.00182
307 1 0.00346
324 1 0.00306
346 1 0.00391
388 1 0.00433
584 1 0.00522
626 1 0.0051
2470 1 0.00539
5010 1 0.00549
5520 1 0.00563
8810 1 0.00557
16600 1 0.00563
19400 1 0.00557
26100 1 0.00559
63000 1 0.00562
67500 1 0.00562
70400 1 0.00562
95800 1 0.00563
133000 1 0.00563
152000 1 0.00563
182000 1 0.00563
186000 1 0.00563
231000 1 0.00563
237000 1 0.00563
259000 1 0.00563
268000 1 0.00563
305000 1 0.00563
327000 1 0.00563
332000 1 0.00563

CL194 ----> CL244

image

No. of shared pairs: :55

CL194 ----> CL210

image

No. of shared pairs: :52

CL194 ----> CL164

image

No. of shared pairs: :16