Cluster no. 196

Go back to cluster table

Cluster is part of supercluster: 101

Cluster characteristics:

size 5855
size_real 5855
ecount 26243
supercluster 101
annotations_summary 0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
pair_completeness 0.477416098914963
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000512382578992314
satellite_probability 3.21043016719236e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Gymco-II Ty1-RH Gymco-II Ty1-RH 1 0.00017

clusters with similarity:

Cluster Number of similarity hits
25 6
30 4
138 2
215 2
162 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
30 65 0.0143
25 41 0.0146
322 26 0.0235
351 17 0.0147
162 14 0.00641
1010 13 0.0123
543 10 0.00942
2 9 0.00139
3520 9 0.00863
563 8 0.00747
189 7 0.00353
4000 6 0.00575
6640 6 0.00576
7 5 0.000917
74 5 0.00205
123 5 0.00245
161 5 0.00215
9 4 0.00111
34 4 0.0012
48 4 0.000956
51 4 0.00105
130 4 0.00132
134 4 0.00177
823 4 0.00377
4810 4 0.00385
7430 4 0.00385
44000 4 0.00386
1 3 0.000673
15 3 9e-04
17 3 0.000449
20 3 0.000685
45 3 0.000829
46 3 0.00117
49 3 0.00112
68 3 0.00123
90 3 0.000888
143 3 0.00136
5230 3 0.00288
9540 3 0.00289
18400 3 0.00289
26900 3 0.00289
27400 3 0.00289
40500 3 0.00289
83100 3 0.00289
6 2 0.000423
18 2 0.000715
21 2 0.000608
26 2 0.000658
29 2 0.000719
44 2 0.000506
54 2 0.001
78 2 0.000575
81 2 0.000622
85 2 0.00086
86 2 0.000583
87 2 0.000866
110 2 0.00106
120 2 0.000871
122 2 9e-04
128 2 0.00116
156 2 0.00108
163 2 0.000873
170 2 0.000958
172 2 0.000918
181 2 0.00113
182 2 0.00111
195 2 0.00143
213 2 0.000951
215 2 0.0014
245 2 0.00123
247 2 0.00131
313 2 0.00173
716 2 0.00187
2800 2 0.00192
3610 2 0.00192
4700 2 0.00192
4860 2 0.00192
8870 2 0.00193
11600 2 0.00193
13200 2 0.00193
13500 2 0.00193
16000 2 0.00193
17500 2 0.00193
22800 2 0.00193
22800 2 0.00193
38800 2 0.00193
47200 2 0.00193
63300 2 0.00193
76000 2 0.00193
78800 2 0.00193
80500 2 0.00193
98000 2 0.00193
101000 2 0.00193
129000 2 0.00193
131000 2 0.00193
131000 2 0.00193
144000 2 0.00193
148000 2 0.00193
192000 2 0.00193
223000 2 0.00193
233000 2 0.00193
246000 2 0.00193
247000 2 0.00193
256000 2 0.00193
258000 2 0.00193
271000 2 0.00193
278000 2 0.00193
281000 2 0.00193
286000 2 0.00193
303000 2 0.00193
319000 2 0.00193
319000 2 0.00193
329000 2 0.00193
344000 2 0.00193
10 1 0.000423
12 1 2e-04
14 1 0.000233
19 1 0.00035
24 1 0.000249
27 1 0.000433
31 1 0.000169
33 1 0.000434
38 1 0.000456
39 1 0.000411
47 1 0.00029
50 1 0.000382
67 1 0.00032
69 1 0.000486
70 1 0.000536
72 1 0.000441
73 1 0.00054
76 1 0.000427
82 1 0.000503
88 1 0.000304
89 1 0.000432
91 1 0.000592
93 1 0.00056
94 1 0.000752
96 1 0.000499
97 1 0.000391
98 1 0.000527
99 1 0.00059
102 1 0.000301
103 1 0.000335
113 1 0.000437
114 1 0.000605
118 1 0.000551
119 1 0.000639
124 1 0.000525
125 1 0.000566
127 1 0.000455
131 1 0.000773
139 1 0.000474
140 1 0.000341
153 1 0.000434
158 1 0.000507
164 1 0.000803
168 1 0.000462
169 1 0.000571
174 1 0.000481
175 1 0.000622
177 1 0.000682
180 1 0.000697
184 1 0.000697
192 1 0.000873
199 1 0.00077
227 1 0.000749
229 1 0.000609
233 1 0.000841
235 1 0.000601
242 1 0.00067
243 1 0.000616
273 1 0.000683
276 1 0.000704
285 1 0.000859
294 1 0.000836
307 1 0.000871
314 1 0.000857
332 1 0.000887
345 1 0.000847
429 1 0.000925
430 1 0.000898
437 1 0.000913
461 1 0.000916
516 1 0.000948
654 1 0.000935
817 1 0.000947
966 1 0.000953
1060 1 0.000947
2380 1 0.000959
3530 1 0.00096
4130 1 0.000962
4980 1 0.000962
5740 1 0.000962
5820 1 0.000961
6050 1 0.000962
6240 1 0.000962
6540 1 0.000961
7800 1 0.000962
8610 1 0.000964
9760 1 0.000963
10300 1 0.000963
11400 1 0.000965
12900 1 0.000962
14600 1 0.000964
14900 1 0.000963
15700 1 0.000963
16500 1 0.000964
16900 1 0.000964
18000 1 0.000964
18900 1 0.000964
19100 1 0.000963
19500 1 0.000964
19600 1 0.000963
20500 1 0.000964
25900 1 0.000963
25900 1 0.000964
26700 1 0.000964
26900 1 0.000965
27000 1 0.000963
27900 1 0.000965
29800 1 0.000965
29900 1 0.000964
30500 1 0.000965
30800 1 0.000964
32600 1 0.000965
33000 1 0.000965
33300 1 0.000965
33900 1 0.000964
36200 1 0.000965
36200 1 0.000965
36400 1 0.000964
36400 1 0.000964
36800 1 0.000964
37800 1 0.000964
40000 1 0.000964
40900 1 0.000964
41000 1 0.000965
41500 1 0.000965
43600 1 0.000965
44300 1 0.000964
44500 1 0.000964
46600 1 0.000965
47000 1 0.000964
47500 1 0.000964
47500 1 0.000965
47700 1 0.000964
49500 1 0.000964
52700 1 0.000965
52900 1 0.000964
54200 1 0.000964
54500 1 0.000964
57700 1 0.000964
58400 1 0.000965
58900 1 0.000964
59200 1 0.000964
62300 1 0.000964
65300 1 0.000965
66700 1 0.000965
66700 1 0.000965
67800 1 0.000965
70500 1 0.000965
72400 1 0.000964
77100 1 0.000964
81400 1 0.000965
84000 1 0.000965
93000 1 0.000965
97600 1 0.000965
103000 1 0.000965
105000 1 0.000965
109000 1 0.000965
119000 1 0.000965
123000 1 0.000965
131000 1 0.000965
132000 1 0.000965
135000 1 0.000965
136000 1 0.000965
136000 1 0.000965
145000 1 0.000965
147000 1 0.000965
151000 1 0.000965
153000 1 0.000965
155000 1 0.000965
158000 1 0.000965
160000 1 0.000965
161000 1 0.000965
170000 1 0.000965
181000 1 0.000965
183000 1 0.000965
184000 1 0.000965
187000 1 0.000965
188000 1 0.000965
194000 1 0.000965
2e+05 1 0.000965
2e+05 1 0.000965
2e+05 1 0.000965
205000 1 0.000965
209000 1 0.000965
212000 1 0.000965
212000 1 0.000965
214000 1 0.000965
215000 1 0.000965
227000 1 0.000965
230000 1 0.000965
231000 1 0.000965
233000 1 0.000965
246000 1 0.000965
248000 1 0.000965
250000 1 0.000965
251000 1 0.000965
252000 1 0.000965
259000 1 0.000965
263000 1 0.000965
265000 1 0.000965
268000 1 0.000965
270000 1 0.000965
276000 1 0.000965
278000 1 0.000965
285000 1 0.000965
290000 1 0.000965
293000 1 0.000965
317000 1 0.000965
335000 1 0.000965

CL196 ----> CL30

image

No. of shared pairs: :65

CL196 ----> CL25

image

No. of shared pairs: :41

CL196 ----> CL322

image

No. of shared pairs: :26

CL196 ----> CL351

image

No. of shared pairs: :17

CL196 ----> CL162

image

No. of shared pairs: :14

CL196 ----> CL1013

image

No. of shared pairs: :13

CL196 ----> CL543

image

No. of shared pairs: :10