Cluster no. 197

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Cluster is part of supercluster: 63

Cluster characteristics:

size 5786
size_real 5786
ecount 76893
supercluster 63
annotations_summary 0.36% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
pair_completeness 0.52664907651715
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00985136536467335
satellite_probability 6.30293069200862e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-PROT Tekay Ty3-PROT 21 0.00363
Reina Ty3-RH Reina Ty3-RH 1 0.00017

clusters with similarity:

Cluster Number of similarity hits
67 173
74 63
211 6
6 1
15 1
42 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
67 192 0.0643
211 192 0.137
74 178 0.0772
117 27 0.0132
169 17 0.0105
45 12 0.00345
1200 12 0.0131
17 11 0.00168
546 10 0.0107
5470 8 0.00886
20 7 0.00165
90 7 0.00216
7 6 0.00113
29 6 0.00227
35 6 0.00149
44 6 0.00157
48 6 0.00148
686 6 0.00652
22 5 0.00142
24 5 0.00129
47 5 0.00151
4520 5 0.00554
11 4 0.00092
12 4 0.000824
16 4 0.00119
21 4 0.00127
26 4 0.00138
31 4 0.00069
34 4 0.00125
43 4 0.00117
78 4 0.0012
153 4 0.00185
172 4 0.00196
1650 4 0.00441
3450 4 0.00442
6590 4 0.00444
2 3 0.000473
4 3 0.00071
6 3 0.000653
25 3 0.00112
51 3 0.000814
66 3 0.000826
81 3 0.000975
87 3 0.00138
113 3 0.00139
123 3 0.00158
134 3 0.00141
163 3 0.00139
33500 3 0.00334
82800 3 0.00334
3 2 0.000451
9 2 0.000579
10 2 0.000899
15 2 0.000626
18 2 0.000752
23 2 0.000631
28 2 0.000879
36 2 0.000836
40 2 0.000458
41 2 0.000529
46 2 0.000828
49 2 0.000789
59 2 0.00102
63 2 0.000525
72 2 0.00094
83 2 0.000976
86 2 0.000608
89 2 0.000919
97 2 0.000827
106 2 0.000885
121 2 0.00143
147 2 0.000576
148 2 0.00104
174 2 0.00103
178 2 0.00148
187 2 0.00132
205 2 0.00132
222 2 0.00159
223 2 0.00163
239 2 0.00167
267 2 0.00158
1850 2 0.0022
12200 2 0.00222
21000 2 0.00222
31100 2 0.00223
36700 2 0.00222
59900 2 0.00223
145000 2 0.00223
164000 2 0.00223
172000 2 0.00223
249000 2 0.00223
286000 2 0.00223
295000 2 0.00223
325000 2 0.00223
335000 2 0.00223
1 1 0.000231
8 1 0.000411
14 1 0.000241
19 1 0.000368
30 1 0.000226
33 1 0.000462
37 1 0.000255
39 1 0.000436
42 1 0.000379
50 1 0.000404
53 1 0.000271
58 1 0.000588
62 1 0.000286
65 1 0.000466
68 1 0.000435
70 1 0.000579
75 1 0.000263
76 1 0.000454
84 1 0.000416
85 1 0.000457
91 1 0.000645
92 1 0.00067
95 1 0.000548
96 1 0.000536
101 1 0.000421
115 1 0.000384
116 1 0.000344
120 1 0.000463
130 1 0.000346
133 1 0.000278
138 1 0.000621
139 1 0.000507
145 1 0.000439
150 1 0.00054
151 1 0.000567
152 1 0.000384
156 1 0.000582
158 1 0.000546
159 1 0.000595
167 1 0.000453
168 1 0.000494
170 1 0.000513
171 1 0.00058
173 1 0.000726
180 1 0.000771
184 1 0.000771
193 1 0.000745
206 1 0.000743
208 1 0.000775
213 1 0.000509
219 1 0.000838
229 1 0.000665
241 1 0.000851
245 1 0.00067
263 1 0.000724
264 1 0.000892
341 1 0.00101
347 1 0.00096
351 1 0.000979
459 1 0.00107
493 1 0.00107
585 1 0.00108
613 1 0.00109
622 1 0.00108
651 1 0.00108
681 1 0.0011
802 1 0.0011
819 1 0.00109
1080 1 0.00109
1140 1 0.0011
1510 1 0.00111
1910 1 0.0011
2520 1 0.00111
3140 1 0.0011
3350 1 0.00111
4820 1 0.00111
5930 1 0.00111
6920 1 0.00111
11900 1 0.00111
12400 1 0.00111
15100 1 0.00111
15500 1 0.00111
16900 1 0.00111
19700 1 0.00111
21800 1 0.00111
22000 1 0.00111
22600 1 0.00111
23400 1 0.00111
24200 1 0.00111
24400 1 0.00111
27000 1 0.00111
27900 1 0.00111
30400 1 0.00111
31300 1 0.00111
32500 1 0.00111
33400 1 0.00111
35500 1 0.00111
36400 1 0.00111
39400 1 0.00111
40500 1 0.00111
42000 1 0.00111
44500 1 0.00111
45400 1 0.00111
46400 1 0.00111
47000 1 0.00111
47200 1 0.00111
49200 1 0.00111
51800 1 0.00111
54900 1 0.00111
58900 1 0.00111
60000 1 0.00111
63900 1 0.00111
68800 1 0.00111
74200 1 0.00111
76400 1 0.00111
78900 1 0.00111
80900 1 0.00111
82900 1 0.00111
103000 1 0.00111
107000 1 0.00111
107000 1 0.00111
108000 1 0.00111
116000 1 0.00111
133000 1 0.00111
145000 1 0.00111
158000 1 0.00111
160000 1 0.00111
167000 1 0.00111
169000 1 0.00111
183000 1 0.00111
198000 1 0.00111
202000 1 0.00111
207000 1 0.00111
210000 1 0.00111
224000 1 0.00111
230000 1 0.00111
239000 1 0.00111
243000 1 0.00111
249000 1 0.00111
250000 1 0.00111
279000 1 0.00111
279000 1 0.00111
282000 1 0.00111
291000 1 0.00111
292000 1 0.00111
292000 1 0.00111
299000 1 0.00111
306000 1 0.00111
342000 1 0.00111
343000 1 0.00111
345000 1 0.00111

CL197 ----> CL67

image

No. of shared pairs: :192

CL197 ----> CL211

image

No. of shared pairs: :192

CL197 ----> CL74

image

No. of shared pairs: :178

CL197 ----> CL117

image

No. of shared pairs: :27

CL197 ----> CL169

image

No. of shared pairs: :17

CL197 ----> CL45

image

No. of shared pairs: :12

CL197 ----> CL1199

image

No. of shared pairs: :12

CL197 ----> CL17

image

No. of shared pairs: :11

CL197 ----> CL546

image

No. of shared pairs: :10