Cluster no. 199

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Cluster is part of supercluster: 103

Cluster characteristics:

size 5620
size_real 5620
ecount 153312
supercluster 103
annotations_summary 25.82% Class_II/Subclass_1/TIR/hAT:hAT-TPase
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
pair_completeness 0.828236824983735
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00106761565836299
satellite_probability 1.43574013326601e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-RT CRM Ty3-RT 2 0.00036
hAT hAT-TPase hAT hAT-TPase 1451 0.25819

clusters with similarity:

Cluster Number of similarity hits
122 139
26 15
30 2
85 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
122 127 0.0876
916 22 0.0773
2 9 0.00157
30 7 0.00185
78 6 0.00222
3260 5 0.0184
22 4 0.00138
51 4 0.00131
25 3 0.00147
68 3 0.0018
81 3 0.00123
38700 3 0.0113
9 2 0.000708
15 2 0.000781
21 2 0.000794
23 2 0.000789
48 2 0.000586
56 2 0.00412
72 2 0.00134
77 2 0.00135
85 2 0.00129
137 2 0.00169
218 2 0.00427
271 2 0.0055
706 2 0.00697
17200 2 0.00752
17600 2 0.00752
23200 2 0.00753
29300 2 0.00752
85500 2 0.00755
91500 2 0.00755
1 1 0.000271
7 1 0.000214
10 1 0.000628
13 1 0.000596
17 1 0.000169
19 1 0.00048
20 1 0.000277
26 1 0.000441
28 1 0.000609
29 1 0.000497
38 1 0.000703
40 1 0.000268
41 1 0.000318
49 1 0.000525
59 1 0.000758
62 1 0.000349
63 1 0.000315
73 1 0.000925
75 1 0.000315
76 1 0.000638
80 1 0.000636
83 1 0.000706
86 1 0.000376
89 1 0.000648
91 1 0.00109
95 1 0.00084
100 1 0.000849
101 1 0.000574
105 1 0.000596
111 1 0.000363
115 1 0.000506
119 1 0.00126
124 1 0.000881
126 1 0.000729
130 1 0.000443
134 1 0.000672
146 1 0.00102
159 1 0.000954
164 1 0.00211
170 1 0.00076
174 1 0.000764
176 1 0.00134
178 1 0.00138
179 1 0.00117
185 1 0.000962
191 1 0.000844
196 1 0.00077
200 1 0.000917
206 1 0.0014
210 1 0.00242
212 1 0.00169
213 1 0.000751
225 1 0.00216
240 1 0.00293
245 1 0.00116
261 1 0.00319
318 1 0.00223
384 1 0.00345
703 1 0.00334
1880 1 0.00364
2000 1 0.00366
4720 1 0.00373
5010 1 0.00371
8860 1 0.00376
10900 1 0.00375
14200 1 0.00377
20200 1 0.00376
20900 1 0.00375
26200 1 0.00375
31300 1 0.00377
31800 1 0.00377
48100 1 0.00378
69900 1 0.00377
70700 1 0.00378
73800 1 0.00378
74900 1 0.00377
84600 1 0.00378
104000 1 0.00377
128000 1 0.00377
128000 1 0.00377
148000 1 0.00377
215000 1 0.00377
226000 1 0.00377
235000 1 0.00377
247000 1 0.00377
281000 1 0.00377
283000 1 0.00377
285000 1 0.00377

CL199 ----> CL122

image

No. of shared pairs: :127

CL199 ----> CL916

image

No. of shared pairs: :22