Cluster no. 201

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Cluster is part of supercluster: 104

Cluster characteristics:

size 5522
size_real 5522
ecount 109860
supercluster 104
annotations_summary 99.78% organelle/plastid
pair_completeness 0.92941998602376
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00108656283955089
satellite_probability 1.56020511944627e-24
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 5510 1

clusters with similarity:

Cluster Number of similarity hits
246 2
19 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
310 10 0.0791
246 9 0.0496
131 4 0.0112
236 4 0.0262
253 4 0.00842
77 3 0.00227
2 2 0.00036
5 2 0.00123
17 2 0.000348
23 2 0.000843
25 2 0.00107
26 2 0.00095
43 2 0.000764
52 2 0.00106
57 2 0.00182
87 2 0.00146
98 2 0.00208
119 2 0.00318
134 2 0.00151
156 2 0.00217
176 2 0.00345
188 2 0.00966
224 2 0.0108
261 2 0.0133
3 1 0.000275
4 1 0.000291
7 1 0.000221
14 1 0.000298
15 1 0.000417
18 1 0.000537
19 1 0.00052
27 1 0.000727
28 1 0.000676
32 1 0.000655
40 1 0.00028
41 1 0.000335
47 1 0.000398
48 1 0.000308
50 1 0.000595
51 1 0.000346
60 1 0.000881
71 1 0.000436
79 1 0.00041
83 1 0.000798
85 1 0.000719
88 1 0.000425
90 1 0.000409
92 1 0.00144
94 1 0.00253
117 1 0.000803
118 1 0.00113
121 1 0.00166
126 1 0.000827
127 1 0.00079
129 1 0.00147
146 1 0.00122
150 1 0.000946
154 1 0.00157
155 1 0.00122
171 1 0.00108
175 1 0.00148
178 1 0.00179
183 1 0.00116
194 1 0.0036
202 1 0.00245
204 1 0.00245
216 1 0.00271
218 1 0.00328
232 1 0.00204
234 1 0.00383
235 1 0.00137
237 1 0.00241
275 1 0.0061
480 1 0.0082
669 1 0.00881
1480 1 0.00905
3510 1 0.00952
4830 1 0.00948
5510 1 0.00943
9070 1 0.0098
18100 1 0.00971
35200 1 0.0098
38700 1 0.0098
49700 1 0.00976
61200 1 0.00976
99600 1 0.0098
214000 1 0.0098

CL201 ----> CL310

image

No. of shared pairs: :10