Cluster no. 202

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Cluster is part of supercluster: 105

Cluster characteristics:

size 5480
size_real 5480
ecount 39875
supercluster 105
annotations_summary 13.70% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
7.94% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
6.46% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
4.62% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
3.65% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
3.45% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
0.75% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.20% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.09% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RH
0.09% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.02% Class_I/pararetrovirus:PARA-RT
pair_completeness 0.798490318345914
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00875912408759124
satellite_probability 3.7950125041552e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
pararetrovirus PARA-RT pararetrovirus PARA-RT 1 0.00018
TatII Ty3-GAG TatII Ty3-GAG 253 0.04617
TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00018
Athila Ty3-INT Athila Ty3-INT 1 0.00018
TatII Ty3-INT TatII Ty3-INT 751 0.13704
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 2 0.00036
TatV Ty3-INT TatV Ty3-INT 5 0.00091
TatII Ty3-PROT TatII Ty3-PROT 189 0.03449
Galadriel Ty3-RH Galadriel Ty3-RH 5 0.00091
Reina Ty3-RH Reina Ty3-RH 1 0.00018
TatII Ty3-RH TatII Ty3-RH 354 0.06460
Athila Ty3-RT Athila Ty3-RT 2 0.00036
CRM Ty3-RT CRM Ty3-RT 1 0.00018
TatII Ty3-RT TatII Ty3-RT 435 0.07938
TatV Ty3-RT TatV Ty3-RT 2 0.00036
TatII Ty3-aRH TatII Ty3-aRH 200 0.03650
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 11 0.00201
TatV Ty3-aRH TatV Ty3-aRH 41 0.00748

clusters with similarity:

Cluster Number of similarity hits
5 64
93 8
23 7
9 5
208 2
225 2
269 2
70 1
85 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
23 53 0.0206
9 36 0.0126
1280 10 0.031
613 9 0.0276
3250 9 0.0284
778 8 0.0246
3490 7 0.0222
540 6 0.0186
19 5 0.00235
67 5 0.00209
98 4 0.00342
1550 4 0.0127
6970 4 0.0128
22500 4 0.0129
3 3 0.000781
4 3 0.000825
7 3 0.000635
15 3 0.00115
85 3 0.00188
92 3 0.00332
138 3 0.00294
4190 3 0.00957
4540 3 0.00965
5930 3 0.00966
6210 3 0.00963
26800 3 0.00969
56200 3 0.00972
5 2 0.00109
6 2 5e-04
13 2 0.00116
17 2 0.000336
29 2 0.000974
30 2 0.000523
33 2 0.00127
36 2 0.00111
38 2 0.00136
43 2 0.000708
72 2 0.0013
76 2 0.00124
86 2 0.00074
103 2 0.000887
117 2 0.00138
130 2 0.000869
152 2 0.000993
557 2 0.00602
1240 2 0.00627
2160 2 0.00635
2730 2 0.00641
4520 2 0.00641
7660 2 0.0064
168000 2 0.00649
177000 2 0.00649
243000 2 0.00649
8 1 0.000542
14 1 0.00028
16 1 0.000361
21 1 0.00039
22 1 0.00034
24 1 0.000305
27 1 0.000632
31 1 0.000192
34 1 0.000384
49 1 0.000514
50 1 0.00053
51 1 0.000323
56 1 0.00189
63 1 0.000311
66 1 0.000329
71 1 4e-04
84 1 0.000551
88 1 0.000391
96 1 0.000784
105 1 0.000581
109 1 0.00102
110 1 0.000865
122 1 0.00067
123 1 0.000764
124 1 0.000849
133 1 0.000333
141 1 0.000656
143 1 0.00068
144 1 0.00125
151 1 0.000851
153 1 0.000634
158 1 0.000805
162 1 0.000686
173 1 0.00127
175 1 0.00114
194 1 0.00207
195 1 0.00149
201 1 0.00245
208 1 0.00143
213 1 0.000728
217 1 0.00123
230 1 0.00216
232 1 0.00144
233 1 0.00217
239 1 0.00164
242 1 0.00131
247 1 0.00126
302 1 0.00242
314 1 0.00228
353 1 0.00275
358 1 0.00282
430 1 0.0026
1670 1 0.00313
1700 1 0.00318
4770 1 0.00321
4930 1 0.00319
6840 1 0.00323
9390 1 0.00322
10400 1 0.00323
15800 1 0.00322
16200 1 0.00324
17800 1 0.00323
18200 1 0.00323
18700 1 0.00325
19100 1 0.00324
23500 1 0.00323
24700 1 0.00324
29600 1 0.00324
32300 1 0.00325
38500 1 0.00324
42000 1 0.00324
45000 1 0.00324
47800 1 0.00324
48600 1 0.00324
51800 1 0.00325
63800 1 0.00324
72600 1 0.00325
72900 1 0.00324
73200 1 0.00324
76400 1 0.00324
77400 1 0.00324
81600 1 0.00325
82700 1 0.00324
83800 1 0.00325
84800 1 0.00324
140000 1 0.00325
147000 1 0.00325
167000 1 0.00325
173000 1 0.00325
181000 1 0.00325
192000 1 0.00325
193000 1 0.00325
206000 1 0.00325
208000 1 0.00325
213000 1 0.00325
241000 1 0.00325
287000 1 0.00325
294000 1 0.00325
330000 1 0.00325

CL202 ----> CL23

image

No. of shared pairs: :53

CL202 ----> CL9

image

No. of shared pairs: :36

CL202 ----> CL1284

image

No. of shared pairs: :10