Cluster no. 204

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Cluster is part of supercluster: 107

Cluster characteristics:

size 5259
size_real 5259
ecount 49189
supercluster 107
annotations_summary 1.50% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.49% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-GAG
pair_completeness 0.790602655771195
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0144514166191291
satellite_probability 4.37839568147256e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 26 0.00494
TatIV_Ogre Ty3-GAG TatIV_Ogre Ty3-GAG 1 0.00019
TatV Ty3-GAG TatV Ty3-GAG 79 0.01502

clusters with similarity:

Cluster Number of similarity hits
50 85
84 40

clusters connected through mates:

Cluster Number of shared
read pairs
k
84 95 0.0523
50 67 0.0355
11700 8 0.0257
6480 7 0.0224
12100 6 0.0193
16500 5 0.0161
3320 4 0.0129
14500 4 0.0129
11 3 0.000799
102 3 0.00116
20700 3 0.00966
24400 3 0.00971
31500 3 0.00969
60400 3 0.00971
3 2 0.00052
6 2 5e-04
22 2 0.000679
28 2 0.00119
33 2 0.00127
34 2 0.000769
88 2 0.000782
159 2 0.00183
213 2 0.00145
1750 2 0.00632
13900 2 0.00643
17100 2 0.00646
17900 2 0.00646
21300 2 0.00647
22100 2 0.00645
29100 2 0.00645
30200 2 0.00648
39500 2 0.00648
40600 2 0.00648
61100 2 0.00647
82700 2 0.00647
120000 2 0.00648
141000 2 0.00648
168000 2 0.00648
237000 2 0.00648
239000 2 0.00648
314000 2 0.00648
318000 2 0.00648
332000 2 0.00648
1 1 0.000268
4 1 0.000275
5 1 0.000547
7 1 0.000212
8 1 0.000542
12 1 0.000234
14 1 0.00028
15 1 0.000384
18 1 0.000483
21 1 0.00039
24 1 0.000305
26 1 0.000433
27 1 0.000632
30 1 0.000261
31 1 0.000192
36 1 0.000554
46 1 0.000548
47 1 0.000368
54 1 0.000786
63 1 0.000311
70 1 0.000878
71 1 4e-04
72 1 0.00065
75 1 0.000311
78 1 0.000364
85 1 0.000626
87 1 0.000633
97 1 0.000547
98 1 0.000855
101 1 0.00056
115 1 0.000496
117 1 0.000688
130 1 0.000434
134 1 0.000653
146 1 0.000975
153 1 0.000634
164 1 0.00193
165 1 0.000682
170 1 0.000736
172 1 0.000689
173 1 0.00127
179 1 0.00112
201 1 0.00245
219 1 0.00165
232 1 0.00144
233 1 0.00217
236 1 0.00279
239 1 0.00164
242 1 0.00131
271 1 0.00246
307 1 0.00238
330 1 0.00291
1560 1 0.00316
10400 1 0.00324
11000 1 0.00322
17800 1 0.00324
23300 1 0.00324
24100 1 0.00325
29100 1 0.00323
29200 1 0.00324
31000 1 0.00324
40100 1 0.00324
41900 1 0.00323
43500 1 0.00324
47400 1 0.00324
49400 1 0.00324
50800 1 0.00325
52100 1 0.00324
52900 1 0.00324
53100 1 0.00325
53400 1 0.00324
55200 1 0.00325
58600 1 0.00324
60600 1 0.00325
65600 1 0.00324
73000 1 0.00325
73100 1 0.00325
75900 1 0.00324
78100 1 0.00324
88100 1 0.00324
88900 1 0.00324
89700 1 0.00324
107000 1 0.00324
121000 1 0.00324
121000 1 0.00324
129000 1 0.00324
145000 1 0.00324
145000 1 0.00324
154000 1 0.00324
158000 1 0.00324
186000 1 0.00324
190000 1 0.00324
204000 1 0.00324
205000 1 0.00324
217000 1 0.00324
228000 1 0.00324
228000 1 0.00324
234000 1 0.00324
235000 1 0.00324
265000 1 0.00324
272000 1 0.00324
287000 1 0.00324
306000 1 0.00324
324000 1 0.00324
327000 1 0.00324

CL204 ----> CL84

image

No. of shared pairs: :95

CL204 ----> CL50

image

No. of shared pairs: :67