Cluster no. 205

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Cluster is part of supercluster: 22

Cluster characteristics:

size 5221
size_real 5221
ecount 160888
supercluster 22
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness 0.61490875347974
pbs_score 1.4681022
TR_score 0.30112749867492145
TR_monomer_length 1200.0
loop_index 0.725809542057866
satellite_probability 0.0230180932755689
consensus 
CCATGGGTGGATGAATACCATGGGTTGATGCCATTTTCCATTCGGATCATTCCTCCCTCCTTAAGAAGCAATGGTCCCCA
TTGCGTGAAGTTCCCTCCTGCGAAGCCTTTGTTGAATATGAAGAGCCACTGAAGAGAAGGGTTTTATGTGGTTAACCCAT
AACCATGATGAACGAAGATCCGAGGATAGAGATACCCTGTAATGCTTGTGACCAACTGTGATACTGACAGTGTGCGGCCT
AGCAAATGGACTTCGATGAAGTGTGGTTTTGTGGATGACCCATAACCGTGATGTTGGTTGCTGATGAAGTAGCAGGTGCC
TACATAGCCTGGGGTGGGAGGGCACGTCTCCAAAGGGAACCCACTCCGAATGCTGCTCCAGAATTAAAATGGACATAACT
CGGTCAATATAACTCAGAATATTTATTATAACCTGTTTTTGGAAACAGAAGGACCATTTTGCATCTTCCCATGTGATAGA
AATCCTGATCCAGGCACTGGAATTTCAGATCTGCGCTGCAACTCTCCCGCCGTCACCAAAATTTCTGAAAAAAGAGCTGA
TTTTAAATCAGCGATATCTCCCTCATCCGGACTCCGATTCGACTGATTTTTTTTTTGAAATTGGGTATTTTTTCACAAAG
AATCCAGATCTGCTATTAGATTTTGTAGATTTTGCACCAAAAGTTTCAGATCTGATCTGCAAAGTCGCCGCCCAAAAAAA
ATCCTGCAAAAAAATGAAAAAAGAAAAATTCTTCCTGCTTGACCCAAGAAAGTGCTCTGTGGAGGTTGTAGCACATGCCT
GAAGTTTGTTGAATATTGCTGCAAAATTTGAAACTGAAATATGCATCAAACCCTCATTCCCATGGAATCATAACCTGCTC
TGATACCACTGATCCGGATCTTGGGGGGAGGCCCCCAAGATCTAAAAGATTGAAATGGATCTTGGGGGGAGAGACCCCCA
AGATCTGAAAACTTGAATTGCCAGAAGAAAAATAGGAGAATGCCCAATAAACAAAACCACAAAGAAACTTTTTTATTAAA
ACCGATAATAACTGTAAAGGCTACATTGTGGCGGACAATCTGTCCTTTTACAAAATGTGACTTGTTACTTATAGTATTTT
TCAGTTACAATACCACGGGTCAATTCCATGGGTGAATGAATACCATGGGTGGATGTCACTTACAATACCATGGGTAAATT

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    0.999993784920975
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
CRM Ty3-GAG

CRM

Ty3-GAG

1

0.00019


 
	


 

 


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    48
    619
  

  

    11
    167
  

  

    66
    80
  

  

    186
    64
  

  

    134
    47
  

  

    252
    23
  

  

    91
    19
  

  

    86
    17
  

  

    24
    1
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    252
    130
    0.146
  

  

    134
    126
    0.0682
  

  

    48
    70
    0.0186
  

  

    11
    47
    0.0115
  

  

    86
    30
    0.00994
  

  

    91
    21
    0.0165
  

  

    186
    20
    0.0107
  

  

    772
    8
    0.0126
  

  

    23
    6
    0.00207
  

  

    12
    5
    0.00109
  

  

    16
    5
    0.00162
  

  

    17
    5
    0.000798
  

  

    20
    5
    0.00126
  

  

    13
    4
    0.00197
  

  

    21
    4
    0.00139
  

  

    30
    4
    0.000966
  

  

    47
    4
    0.00132
  

  

    568
    4
    0.00632
  

  

    1
    3
    0.000741
  

  

    14
    3
    0.000773
  

  

    24
    3
    0.000834
  

  

    34
    3
    0.00103
  

  

    45
    3
    0.000936
  

  

    66
    3
    0.000894
  

  

    72
    3
    0.00162
  

  

    127
    3
    0.00168
  

  

    153
    3
    0.00158
  

  

    212
    3
    0.00316
  

  

    4
    2
    0.000506
  

  

    6
    2
    0.000463
  

  

    7
    2
    0.000397
  

  

    9
    2
    0.000629
  

  

    26
    2
    0.000762
  

  

    27
    2
    0.00105
  

  

    29
    2
    0.000844
  

  

    44
    2
    0.000565
  

  

    55
    2
    0.000469
  

  

    61
    2
    0.000907
  

  

    62
    2
    0.00062
  

  

    67
    2
    0.000738
  

  

    98
    2
    0.00135
  

  

    99
    2
    0.00156
  

  

    110
    2
    0.00136
  

  

    120
    2
    0.00106
  

  

    128
    2
    0.00153
  

  

    139
    2
    0.00118
  

  

    145
    2
    0.000998
  

  

    147
    2
    0.000626
  

  

    181
    2
    0.00147
  

  

    197
    2
    0.00132
  

  

    219
    2
    0.00218
  

  

    243
    2
    0.00165
  

  

    245
    2
    0.00164
  

  

    273
    2
    0.0019
  

  

    10400
    2
    0.0032
  

  

    25400
    2
    0.00321
  

  

    32700
    2
    0.0032
  

  

    203000
    2
    0.00321
  

  

    218000
    2
    0.00321
  

  

    281000
    2
    0.00321
  

  

    2
    1
    0.000165
  

  

    3
    1
    0.00024
  

  

    15
    1
    0.000343
  

  

    18
    1
    0.000419
  

  

    19
    1
    0.000409
  

  

    22
    1
    0.000307
  

  

    25
    1
    0.000418
  

  

    28
    1
    5e-04
  

  

    31
    1
    0.000181
  

  

    32
    1
    0.000488
  

  

    33
    1
    0.000529
  

  

    36
    1
    0.000472
  

  

    39
    1
    0.000496
  

  

    42
    1
    0.000423
  

  

    43
    1
    0.000318
  

  

    46
    1
    0.000467
  

  

    49
    1
    0.000442
  

  

    52
    1
    0.000416
  

  

    53
    1
    0.000293
  

  

    56
    1
    0.00118
  

  

    57
    1
    0.000617
  

  

    65
    1
    0.000534
  

  

    68
    1
    0.000494
  

  

    69
    1
    0.000609
  

  

    74
    1
    0.000492
  

  

    75
    1
    0.000283
  

  

    76
    1
    0.000519
  

  

    78
    1
    0.000326
  

  

    80
    1
    0.000518
  

  

    81
    1
    0.000357
  

  

    85
    1
    0.000523
  

  

    88
    1
    0.000348
  

  

    89
    1
    0.000526
  

  

    90
    1
    0.000337
  

  

    92
    1
    0.000821
  

  

    95
    1
    0.000646
  

  

    100
    1
    0.000651
  

  

    102
    1
    0.000344
  

  

    105
    1
    0.000491
  

  

    106
    1
    0.000503
  

  

    107
    1
    0.000766
  

  

    108
    1
    0.000711
  

  

    111
    1
    0.000321
  

  

    119
    1
    0.000869
  

  

    121
    1
    0.000891
  

  

    125
    1
    0.000739
  

  

    130
    1
    0.000382
  

  

    133
    1
    0.000301
  

  

    135
    1
    0.000639
  

  

    140
    1
    0.000397
  

  

    141
    1
    0.000544
  

  

    142
    1
    0.000701
  

  

    148
    1
    0.000608
  

  

    150
    1
    0.000633
  

  

    151
    1
    0.000671
  

  

    157
    1
    0.000725
  

  

    159
    1
    0.000711
  

  

    161
    1
    0.000524
  

  

    162
    1
    0.000564
  

  

    167
    1
    0.000517
  

  

    172
    1
    0.000566
  

  

    177
    1
    0.000949
  

  

    187
    1
    0.000806
  

  

    188
    1
    0.00137
  

  

    200
    1
    0.00069
  

  

    207
    1
    0.00114
  

  

    211
    1
    0.00089
  

  

    213
    1
    0.000592
  

  

    223
    1
    0.00105
  

  

    242
    1
    0.000926
  

  

    244
    1
    0.00137
  

  

    247
    1
    9e-04
  

  

    265
    1
    0.00134
  

  

    285
    1
    0.00133
  

  

    291
    1
    0.00125
  

  

    301
    1
    0.00137
  

  

    310
    1
    0.00154
  

  

    462
    1
    0.00157
  

  

    484
    1
    0.00149
  

  

    534
    1
    0.00155
  

  

    558
    1
    0.00153
  

  

    664
    1
    0.00157
  

  

    1440
    1
    0.00157
  

  

    1880
    1
    0.00158
  

  

    1950
    1
    0.00158
  

  

    3290
    1
    0.00158
  

  

    3500
    1
    0.00159
  

  

    3640
    1
    0.00159
  

  

    5640
    1
    0.0016
  

  

    6810
    1
    0.00159
  

  

    7190
    1
    0.0016
  

  

    9860
    1
    0.0016
  

  

    9890
    1
    0.0016
  

  

    9970
    1
    0.0016
  

  

    14100
    1
    0.0016
  

  

    17600
    1
    0.0016
  

  

    24300
    1
    0.0016
  

  

    27800
    1
    0.0016
  

  

    29300
    1
    0.0016
  

  

    32100
    1
    0.0016
  

  

    35900
    1
    0.0016
  

  

    37900
    1
    0.0016
  

  

    38700
    1
    0.0016
  

  

    41800
    1
    0.0016
  

  

    43800
    1
    0.0016
  

  

    45900
    1
    0.00161
  

  

    57400
    1
    0.00161
  

  

    60600
    1
    0.0016
  

  

    64400
    1
    0.00161
  

  

    67900
    1
    0.0016
  

  

    78000
    1
    0.0016
  

  

    80000
    1
    0.00161
  

  

    108000
    1
    0.0016
  

  

    109000
    1
    0.0016
  

  

    130000
    1
    0.0016
  

  

    134000
    1
    0.0016
  

  

    136000
    1
    0.0016
  

  

    144000
    1
    0.0016
  

  

    154000
    1
    0.0016
  

  

    155000
    1
    0.0016
  

  

    156000
    1
    0.0016
  

  

    158000
    1
    0.0016
  

  

    173000
    1
    0.0016
  

  

    180000
    1
    0.0016
  

  

    180000
    1
    0.0016
  

  

    184000
    1
    0.0016
  

  

    196000
    1
    0.0016
  

  

    2e+05
    1
    0.0016
  

  

    201000
    1
    0.0016
  

  

    203000
    1
    0.0016
  

  

    216000
    1
    0.0016
  

  

    219000
    1
    0.0016
  

  

    228000
    1
    0.0016
  

  

    254000
    1
    0.0016
  

  

    260000
    1
    0.0016
  

  

    266000
    1
    0.0016
  

  

    271000
    1
    0.0016
  

  

    283000
    1
    0.0016
  

  

    290000
    1
    0.0016
  

  

    302000
    1
    0.0016
  

  

    302000
    1
    0.0016
  

  

    323000
    1
    0.0016
  

  

    349000
    1
    0.0016
  

       

     

  		
 





  
CL205 ----> CL252

       image
     
 No. of shared pairs: :130





  
CL205 ----> CL134

       image
     
 No. of shared pairs: :126





  
CL205 ----> CL48

       image
     
 No. of shared pairs: :70





  
CL205 ----> CL11

       image
     
 No. of shared pairs: :47





  
CL205 ----> CL86

       image
     
 No. of shared pairs: :30





  
CL205 ----> CL91

       image
     
 No. of shared pairs: :21





  
CL205 ----> CL186

       image
     
 No. of shared pairs: :20