Cluster no. 206

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Cluster is part of supercluster: 108

Cluster characteristics:

size 5200
size_real 5200
ecount 32796
supercluster 108
annotations_summary 5.81% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-GAG
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
pair_completeness 0.706036745406824
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000192307692307692
satellite_probability 1.39099901770407e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-GAG TatIII Ty3-GAG 302 0.05808
TatV Ty3-GAG TatV Ty3-GAG 1 0.00019

clusters with similarity:

Cluster Number of similarity hits
117 4
33 1
49 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
117 40 0.0251
42 35 0.016
2330 12 0.0263
4750 9 0.0198
33 8 0.00466
40 8 0.00204
4 7 0.00185
63 7 0.00209
17 5 0.000821
31 5 0.000935
13200 5 0.0111
28800 5 0.0111
10 4 0.00225
14 4 0.00108
18 4 0.00181
7540 4 0.00882
9100 4 0.00883
10900 4 0.00885
31100 4 0.00889
12 3 0.000681
19 3 0.00132
22 3 0.000973
45 3 0.000989
48 3 0.000834
49 3 0.00144
65 3 0.00177
72 3 0.00179
84 3 0.00153
95 3 0.00218
3260 3 0.00662
24200 3 0.00667
33600 3 0.00667
51000 3 0.00667
54100 3 0.00667
66400 3 0.00667
1 2 0.000516
3 2 0.000502
7 2 0.000411
9 2 0.000665
11 2 0.000513
15 2 0.000729
20 2 0.000527
26 2 0.000816
28 2 0.0011
29 2 0.000911
36 2 0.00103
41 2 6e-04
43 2 0.000674
44 2 0.000594
62 2 0.000655
74 2 0.00108
88 2 0.000741
93 2 0.00167
102 2 0.000732
106 2 0.0011
130 2 0.000818
138 2 0.00172
145 2 0.00109
171 2 0.00157
185 2 0.00164
194 2 0.0032
258 2 0.00207
289 2 0.00366
341 2 0.00369
2310 2 0.00437
5630 2 0.00442
8070 2 0.00443
9190 2 0.00442
15900 2 0.00445
16900 2 0.00443
32000 2 0.00445
80400 2 0.00445
92800 2 0.00445
99000 2 0.00445
128000 2 0.00445
170000 2 0.00445
172000 2 0.00445
176000 2 0.00445
190000 2 0.00445
193000 2 0.00445
278000 2 0.00445
314000 2 0.00445
5 1 0.000508
6 1 0.000241
13 1 0.000537
21 1 0.00037
23 1 0.000368
30 1 0.000252
50 1 0.000493
51 1 0.000309
52 1 0.000449
55 1 0.000245
59 1 0.000665
60 1 0.000675
66 1 0.000314
67 1 0.000394
68 1 0.00054
70 1 0.000782
71 1 0.000379
73 1 0.00079
77 1 0.000599
78 1 0.000346
80 1 0.000569
82 1 0.000714
85 1 0.000576
86 1 0.000352
89 1 0.000579
92 1 0.000958
96 1 0.000706
97 1 0.000508
100 1 0.000734
108 1 0.000812
110 1 0.000771
111 1 0.00034
113 1 0.000587
114 1 0.000939
119 1 0.00102
120 1 0.000585
124 1 0.000758
127 1 0.00062
128 1 0.000881
129 1 0.000975
134 1 0.000598
137 1 0.000732
141 1 0.000601
146 1 0.000858
148 1 0.000681
151 1 0.00076
153 1 0.000582
159 1 0.000812
160 1 0.000782
161 1 0.000577
163 1 0.000587
174 1 0.00067
179 1 0.000964
182 1 0.000821
187 1 0.000938
195 1 0.00123
197 1 0.000743
199 1 0.0014
210 1 0.00168
217 1 0.00105
218 1 0.00153
220 1 0.0012
228 1 0.00147
257 1 0.00175
302 1 0.00181
306 1 0.00163
308 1 0.00189
376 1 0.00184
438 1 0.00204
453 1 0.00193
478 1 0.002
542 1 0.00209
577 1 0.00216
1310 1 0.00216
2150 1 0.00219
2330 1 0.00221
3090 1 0.0022
3980 1 0.0022
13800 1 0.00221
18400 1 0.00223
19100 1 0.00222
20100 1 0.00222
20600 1 0.00222
22700 1 0.00222
29400 1 0.00223
31600 1 0.00223
32200 1 0.00223
35100 1 0.00222
35700 1 0.00222
37000 1 0.00223
40000 1 0.00222
44700 1 0.00222
49200 1 0.00223
52500 1 0.00222
59100 1 0.00223
59900 1 0.00222
74300 1 0.00223
77700 1 0.00222
78700 1 0.00222
93500 1 0.00223
97600 1 0.00223
109000 1 0.00223
112000 1 0.00223
112000 1 0.00223
117000 1 0.00223
124000 1 0.00223
133000 1 0.00223
146000 1 0.00223
162000 1 0.00223
201000 1 0.00223
207000 1 0.00223
208000 1 0.00223
219000 1 0.00223
245000 1 0.00223
271000 1 0.00223
272000 1 0.00223
281000 1 0.00223
315000 1 0.00223
321000 1 0.00223
323000 1 0.00223
337000 1 0.00223
344000 1 0.00223
345000 1 0.00223

CL206 ----> CL117

image

No. of shared pairs: :40

CL206 ----> CL42

image

No. of shared pairs: :35

CL206 ----> CL2334

image

No. of shared pairs: :12