Cluster no. 208

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Cluster is part of supercluster: 110

Cluster characteristics:

size 5101
size_real 5101
ecount 35668
supercluster 110
annotations_summary 6.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
3.78% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
2.94% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
2.25% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
2.22% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
0.51% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
0.16% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.04% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-INT
0.04% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
0.02% organelle/mitochondria
0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.02% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
pair_completeness 0.73326537546721
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.032346598706136
satellite_probability 2.12435769958469e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.00020
Athila Ty3-GAG Athila Ty3-GAG 2 0.00039
TatII Ty3-GAG TatII Ty3-GAG 150 0.02941
TatV Ty3-GAG TatV Ty3-GAG 4 0.00078
Athila Ty3-INT Athila Ty3-INT 2 0.00039
Reina Ty3-INT Reina Ty3-INT 2 0.00039
TatII Ty3-INT TatII Ty3-INT 313 0.06136
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 0.00020
Tekay Ty3-INT Tekay Ty3-INT 1 0.00020
TatII Ty3-PROT TatII Ty3-PROT 193 0.03784
TatII Ty3-RH TatII Ty3-RH 115 0.02254
TatII Ty3-RT TatII Ty3-RT 7 0.00137
TatII Ty3-aRH TatII Ty3-aRH 113 0.02215
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 26 0.00510
TatV Ty3-aRH TatV Ty3-aRH 8 0.00157

clusters with similarity:

Cluster Number of similarity hits
93 4
202 2
2 1
5 1
92 1
185 1
191 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
93 37 0.0324
2490 13 0.0324
903 10 0.0241
1150 8 0.0197
1940 8 0.0199
4 6 0.00161
1790 6 0.015
2 5 0.000856
44 5 0.00151
1220 5 0.0123
2930 5 0.0124
6660 5 0.0126
3 3 0.000764
6 3 0.000734
7 3 0.000624
17 3 0.000497
39 3 0.00168
40 3 0.000777
82 3 0.00223
98 3 0.00239
163 3 0.00182
1180 3 0.00726
4030 3 0.00755
7410 3 0.00756
11100 3 0.00759
16300 3 0.0076
26300 3 0.00759
29600 3 0.0076
30100 3 0.0076
71300 3 0.00761
9 2 0.000678
12 2 0.00046
22 2 0.00066
23 2 0.000751
24 2 0.000594
30 2 0.000511
35 2 0.000566
36 2 0.00106
42 2 0.000937
49 2 0.000984
61 2 0.00101
63 2 0.000606
66 2 0.00064
74 2 0.00111
85 2 0.00119
90 2 0.000731
101 2 0.00107
105 2 0.00111
110 2 0.00161
133 2 0.000648
134 2 0.00124
146 2 0.0018
152 2 0.000952
191 2 0.00152
14300 2 0.00508
15500 2 0.00508
16400 2 0.00508
17300 2 0.00508
18600 2 0.00507
18900 2 0.00506
22100 2 0.00506
22900 2 0.00508
24200 2 0.00508
25100 2 0.00508
26100 2 0.00508
29900 2 0.00508
36500 2 0.00508
36600 2 0.00508
83900 2 0.00508
140000 2 0.00508
210000 2 0.00508
258000 2 0.00508
349000 2 0.00508
1 1 0.000262
11 1 0.00026
14 1 0.000274
15 1 0.000372
16 1 0.00035
19 1 0.000452
20 1 0.000268
25 1 0.000462
27 1 6e-04
29 1 0.000468
31 1 0.000189
32 1 0.00055
33 1 0.000602
34 1 0.000372
41 1 0.000305
43 1 0.000344
45 1 0.000336
47 1 0.000357
50 1 0.000507
52 1 0.000461
56 1 0.00163
59 1 0.000691
71 1 0.000387
73 1 0.000826
80 1 0.000588
81 1 0.000389
92 1 0.00101
96 1 0.000735
99 1 0.000952
100 1 0.000766
102 1 0.000374
103 1 0.000427
107 1 0.00093
108 1 0.00085
113 1 0.000607
117 1 0.00065
123 1 0.000717
127 1 0.000642
135 1 0.00075
136 1 0.00104
141 1 0.000621
143 1 0.000642
147 1 0.000337
153 1 0.000601
169 1 0.000903
171 1 0.000819
183 1 0.00087
185 1 0.000857
190 1 0.00088
195 1 0.00133
197 1 0.000775
202 1 0.00143
203 1 0.00107
211 1 0.00112
226 1 0.00167
232 1 0.00128
237 1 0.00142
239 1 0.00144
244 1 0.002
257 1 0.00194
264 1 0.00162
285 1 0.00192
290 1 0.00219
293 1 0.00192
319 1 0.00194
329 1 0.00236
331 1 0.00195
402 1 0.00238
429 1 0.00228
449 1 0.0023
451 1 0.00228
627 1 0.00233
685 1 0.00236
1270 1 0.00246
1740 1 0.00248
3130 1 0.0025
4570 1 0.00253
5020 1 0.00253
6460 1 0.00253
7070 1 0.00252
12800 1 0.00253
13200 1 0.00254
15400 1 0.00253
17100 1 0.00254
18700 1 0.00254
19200 1 0.00253
19500 1 0.00253
27300 1 0.00254
27900 1 0.00254
33400 1 0.00254
35300 1 0.00254
41700 1 0.00254
48800 1 0.00254
50800 1 0.00254
54300 1 0.00254
57700 1 0.00254
60100 1 0.00254
62700 1 0.00254
63300 1 0.00254
66700 1 0.00254
74200 1 0.00254
75700 1 0.00254
87100 1 0.00254
87300 1 0.00254
90300 1 0.00254
98500 1 0.00254
106000 1 0.00254
110000 1 0.00254
123000 1 0.00254
123000 1 0.00254
146000 1 0.00254
159000 1 0.00254
170000 1 0.00254
182000 1 0.00254
187000 1 0.00254
214000 1 0.00254
228000 1 0.00254
246000 1 0.00254
252000 1 0.00254
258000 1 0.00254
270000 1 0.00254
272000 1 0.00254
278000 1 0.00254
292000 1 0.00254
3e+05 1 0.00254
316000 1 0.00254
321000 1 0.00254
322000 1 0.00254
338000 1 0.00254

CL208 ----> CL93

image

No. of shared pairs: :37

CL208 ----> CL2493

image

No. of shared pairs: :13

CL208 ----> CL903

image

No. of shared pairs: :10