Cluster no. 209

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Cluster is part of supercluster: 111

Cluster characteristics:

size 5069
size_real 5069
ecount 90138
supercluster 111
annotations_summary 12.33% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
8.38% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
6.73% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RH
4.06% Class_I/LTR/Ty1_copia/Ikeros:Ty1-PROT
3.35% Class_I/LTR/Ty1_copia/Ikeros:Ty1-GAG
0.79% organelle/mitochondria
0.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
pair_completeness 0.853382084095064
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.052278555928191
satellite_probability 2.96551639772753e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 40 0.00789
Ikeros Ty1-GAG Ikeros Ty1-GAG 170 0.03354
Ikeros Ty1-INT Ikeros Ty1-INT 425 0.08384
Ikeros Ty1-PROT Ikeros Ty1-PROT 206 0.04064
Ikeros Ty1-RH Ikeros Ty1-RH 341 0.06727
Ivana Ty1-RH Ivana Ty1-RH 3 0.00059
Ikeros Ty1-RT Ikeros Ty1-RT 625 0.12330

clusters with similarity:

Cluster Number of similarity hits
4 56
84 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
4 17 0.00482
17 4 0.000684
37 3 0.000931
52 3 0.00152
3060 3 0.0144
11400 3 0.0148
14 2 0.000578
18 2 0.00102
20 2 0.000564
36 2 0.00118
59 2 0.00159
68 2 0.00125
97 2 0.00116
163 2 0.00137
15000 2 0.0099
30300 2 0.00993
33100 2 0.00993
184000 2 0.00993
184000 2 0.00993
185000 2 0.00993
288000 2 0.00993
2 1 0.000177
7 1 0.000217
10 1 0.000654
12 1 0.00024
13 1 0.00062
21 1 0.000407
23 1 0.000405
24 1 0.000315
28 1 0.000634
31 1 0.000196
32 1 0.000615
33 1 0.000681
34 1 0.000401
40 1 0.000273
41 1 0.000324
42 1 0.000515
45 1 0.000359
47 1 0.000383
48 1 0.000299
49 1 0.000544
55 1 0.00026
71 1 0.000418
78 1 0.000379
95 1 0.000887
102 1 0.000403
104 1 0.000995
108 1 0.00102
121 1 0.00143
122 1 0.000721
125 1 0.00107
128 1 0.00113
135 1 0.000876
142 1 0.000995
148 1 0.000819
153 1 0.00068
156 1 0.00098
175 1 0.00129
182 1 0.00103
183 1 0.00104
193 1 0.00155
207 1 0.00219
213 1 0.000789
217 1 0.00142
231 1 0.0026
245 1 0.00125
290 1 0.00377
464 1 0.00415
503 1 0.00441
569 1 0.00476
688 1 0.00422
911 1 0.00438
2100 1 0.00481
2230 1 0.00476
8670 1 0.00494
12300 1 0.00491
13000 1 0.00494
19300 1 0.00494
23200 1 0.00498
24000 1 0.00493
25000 1 0.00495
25800 1 0.00495
26900 1 0.00495
28500 1 0.00498
32400 1 0.00496
36800 1 0.00496
38000 1 0.00494
39000 1 0.00494
39200 1 0.00496
45500 1 0.00498
49700 1 0.00495
50300 1 0.00498
55600 1 0.00498
59800 1 0.00498
63600 1 0.00495
68900 1 0.00498
72900 1 0.00498
78700 1 0.00495
82700 1 0.00495
88000 1 0.00496
94300 1 0.00496
102000 1 0.00496
128000 1 0.00496
131000 1 0.00496
143000 1 0.00496
155000 1 0.00496
196000 1 0.00496
202000 1 0.00496
215000 1 0.00496
219000 1 0.00496
234000 1 0.00496
243000 1 0.00496
243000 1 0.00496
249000 1 0.00496
255000 1 0.00496
258000 1 0.00496
268000 1 0.00496
272000 1 0.00496
296000 1 0.00496
299000 1 0.00496
318000 1 0.00496
324000 1 0.00496
329000 1 0.00496
330000 1 0.00496

CL209 ----> CL4

image

No. of shared pairs: :17