Cluster no. 210

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Cluster is part of supercluster: 28

Cluster characteristics:

size 5068
size_real 5068
ecount 904850
supercluster 28
annotations_summary
pair_completeness 0.888930301900857
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.523480662983425
satellite_probability 3.12644207628624e-05
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
233 170
194 159

clusters connected through mates:

Cluster Number of shared
read pairs
k
233 55 0.182
194 52 0.16
74 5 0.00321
19 4 0.00203
6 3 0.00078
17 3 0.000518
18 3 0.00157
38 3 0.00229
2 2 0.000357
8 2 0.00119
16 2 0.000766
24 2 0.00064
50 2 0.00116
56 2 0.0054
68 2 0.00129
72 2 0.00145
81 2 0.000858
111 2 0.000758
164 2 0.00556
217 2 0.00305
248 2 0.0056
9660 2 0.013
1 1 0.00028
7 1 0.000219
9 1 0.000369
11 1 0.000278
12 1 0.000243
14 1 0.000293
20 1 0.000286
26 1 0.000465
27 1 0.000702
28 1 0.000655
29 1 0.000528
30 1 0.000273
33 1 0.000705
36 1 0.000608
39 1 0.000648
40 1 0.000277
41 1 0.00033
44 1 0.000326
47 1 0.00039
48 1 0.000303
51 1 0.000341
52 1 0.000519
64 1 0.000998
66 1 0.000347
70 1 0.00102
75 1 0.000327
77 1 0.000729
83 1 0.000768
84 1 0.000604
88 1 0.000417
92 1 0.00134
93 1 0.00111
97 1 0.000599
102 1 0.000411
103 1 0.000477
110 1 0.001
112 1 0.00126
113 1 0.000713
129 1 0.00138
135 1 0.000917
142 1 0.00105
149 1 0.00123
175 1 0.00138
183 1 0.0011
188 1 0.00392
193 1 0.00168
198 1 0.00181
199 1 0.00242
206 1 0.00168
236 1 0.00499
245 1 0.00134
247 1 0.00157
259 1 0.00281
262 1 0.00493
267 1 0.00192
272 1 0.00196
311 1 0.00446
1040 1 0.00612
1120 1 0.0061
3580 1 0.00647
9900 1 0.00656
10300 1 0.00656
12200 1 0.00667
19600 1 0.00667
23600 1 0.00664
28100 1 0.0066
30500 1 0.00662
67400 1 0.00669
114000 1 0.00667
221000 1 0.00667
238000 1 0.00667
240000 1 0.00667
260000 1 0.00667
269000 1 0.00667

CL210 ----> CL233

image

No. of shared pairs: :55

CL210 ----> CL194

image

No. of shared pairs: :52