Cluster no. 211

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Cluster is part of supercluster: 63

Cluster characteristics:

size 5045
size_real 5045
ecount 116045
supercluster 63
annotations_summary 1.11% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
pair_completeness 0.668320105820106
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00297324083250743
satellite_probability 2.69560262167269e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-PROT CRM Ty3-PROT 56 0.011

clusters with similarity:

Cluster Number of similarity hits
197 6
74 5
17 1
38 1
71 1
150 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
197 192 0.137
106 47 0.0252
87 10 0.00563
4310 9 0.0177
17 7 0.00114
43 7 0.00232
6 6 0.00143
49 5 0.00234
67 5 0.00193
686 5 0.00953
12 4 0.000897
21 4 0.00145
22 4 0.00127
23 4 0.00144
24 4 0.00115
31 4 0.000741
42 4 0.00178
102 4 0.00144
130 4 0.0016
9 3 0.00098
15 3 0.00107
28 3 0.0016
29 3 0.00133
30 3 0.000746
36 3 0.0015
40 3 0.000756
47 3 0.00103
48 3 0.000822
65 3 0.00171
85 3 0.00168
89 3 0.00169
90 3 0.00105
134 3 0.00174
15600 3 0.00595
18600 3 0.00595
54100 3 0.00596
69300 3 0.00596
2 2 0.000336
3 2 0.000495
5 2 0.000989
7 2 0.000407
10 2 0.00109
14 2 0.000532
16 2 0.000675
18 2 0.000884
20 2 0.00052
25 2 0.00088
38 2 0.0012
45 2 0.000648
50 2 0.00096
54 2 0.00136
55 2 0.000483
63 2 0.000586
66 2 0.000618
71 2 0.000743
74 2 0.00105
78 2 0.00068
96 2 0.00136
117 2 0.00121
120 2 0.00114
124 2 0.00146
126 2 0.00124
133 2 0.000626
135 2 0.00139
138 2 0.00165
143 2 0.0012
145 2 0.00106
148 2 0.00131
150 2 0.00137
153 2 0.00113
159 2 0.00156
163 2 0.00114
171 2 0.0015
279 2 0.00271
552 2 0.00377
6280 2 0.00395
7480 2 0.00394
64300 2 0.00398
67600 2 0.00398
112000 2 0.00398
133000 2 0.00398
137000 2 0.00398
295000 2 0.00398
1 1 0.000255
8 1 0.00049
13 1 0.000522
19 1 0.000431
26 1 0.000399
27 1 0.000563
32 1 0.000519
33 1 0.000565
34 1 0.000358
37 1 0.000284
39 1 0.000527
41 1 0.000295
44 1 0.000293
53 1 0.000303
59 1 0.000642
61 1 0.00048
62 1 0.000322
64 1 0.000738
69 1 0.000657
84 1 0.000498
91 1 0.000867
93 1 8e-04
103 1 0.000408
105 1 0.000522
107 1 0.000844
109 1 0.00085
110 1 0.000741
111 1 0.000334
112 1 0.000874
115 1 0.000452
122 1 0.000593
127 1 6e-04
132 1 0.000812
139 1 0.000635
152 1 0.000453
156 1 0.000757
157 1 0.000795
161 1 0.00056
162 1 0.000606
164 1 0.0014
165 1 0.000602
166 1 0.000859
169 1 0.000822
172 1 0.000608
174 1 0.000646
176 1 0.00102
179 1 0.000917
190 1 0.000803
194 1 0.00147
205 1 0.00089
208 1 0.00112
213 1 0.000637
220 1 0.00113
221 1 0.00136
225 1 0.00143
230 1 0.00152
235 1 0.000884
237 1 0.00123
238 1 0.00128
249 1 0.00134
263 1 0.00101
290 1 0.00177
355 1 0.00175
385 1 0.00195
437 1 0.00178
448 1 0.00181
449 1 0.00184
926 1 0.00193
1980 1 0.00196
2620 1 0.00196
3190 1 0.00196
4760 1 0.00197
6110 1 0.00198
9290 1 0.00198
12500 1 0.00198
26200 1 0.00199
29700 1 0.00199
29700 1 0.00199
34100 1 0.00199
38700 1 0.00199
40200 1 0.00199
40200 1 0.00199
41200 1 0.00199
44100 1 0.00199
45200 1 0.00199
49300 1 0.00199
51500 1 0.00199
56800 1 0.00199
63700 1 0.00199
64000 1 0.00199
65000 1 0.00199
69400 1 0.00199
70800 1 0.00199
72100 1 0.00199
79800 1 0.00199
134000 1 0.00199
143000 1 0.00199
168000 1 0.00199
183000 1 0.00199
184000 1 0.00199
194000 1 0.00199
212000 1 0.00199
243000 1 0.00199
276000 1 0.00199
279000 1 0.00199
285000 1 0.00199
334000 1 0.00199
341000 1 0.00199
342000 1 0.00199
342000 1 0.00199

CL211 ----> CL197

image

No. of shared pairs: :192

CL211 ----> CL106

image

No. of shared pairs: :47

CL211 ----> CL87

image

No. of shared pairs: :10