Cluster no. 216

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Cluster is part of supercluster: 116

Cluster characteristics:

size 4471
size_real 4471
ecount 43645
supercluster 116
annotations_summary 0.83% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.02% organelle/mitochondria
0.02% organelle/plastid
pair_completeness 0.785543130990415
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0257213151420264
satellite_probability 8.86933584799603e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.00022
plastid plastid 1 0.00022
Gymco-I Ty1-INT Gymco-I Ty1-INT 37 0.00828

clusters with similarity:

Cluster Number of similarity hits
38 17
118 9
120 2
128 1
256 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
118 66 0.0629
38 24 0.0168
256 7 0.0139
166 5 0.00537
3090 5 0.0183
19400 5 0.0184
20200 5 0.0184
120 4 0.00262
1770 4 0.0145
2950 4 0.0147
3760 4 0.0147
16600 4 0.0147
6 3 0.000757
321 3 0.00901
12500 3 0.0111
18500 3 0.0111
24000 3 0.0111
29300 3 0.0111
29500 3 0.0111
29900 3 0.0111
41500 3 0.0111
63800 3 0.0111
25 2 0.000981
28 2 0.00121
41 2 0.000635
122 2 0.00138
2280 2 0.00729
16100 2 0.00738
19000 2 0.00742
19900 2 0.00739
37900 2 0.00739
42300 2 0.00742
46300 2 0.00741
74600 2 0.00741
77200 2 0.00741
119000 2 0.00742
132000 2 0.00742
155000 2 0.00742
175000 2 0.00742
187000 2 0.00742
191000 2 0.00742
197000 2 0.00742
217000 2 0.00742
253000 2 0.00742
259000 2 0.00742
298000 2 0.00742
331000 2 0.00742
338000 2 0.00742
1 1 0.000271
4 1 0.000278
7 1 0.000214
8 1 0.000554
9 1 0.000354
10 1 0.000627
12 1 0.000237
14 1 0.000283
16 1 0.000366
17 1 0.000169
20 1 0.000277
21 1 0.000396
23 1 0.000394
29 1 0.000496
32 1 0.00059
33 1 0.000651
34 1 0.00039
37 1 0.000304
44 1 0.000314
45 1 0.000351
48 1 0.000293
53 1 0.000326
58 1 0.000932
64 1 0.000891
67 1 0.000424
69 1 0.000776
73 1 0.000921
76 1 0.000636
78 1 0.000369
81 1 0.000408
90 1 0.000383
93 1 0.000983
98 1 0.000885
103 1 0.000451
104 1 0.000932
109 1 0.00106
111 1 0.000362
115 1 0.000505
119 1 0.00125
123 1 0.000787
128 1 0.00105
149 1 0.00107
157 1 0.000975
161 1 0.000644
165 1 0.000701
178 1 0.00138
187 1 0.00113
195 1 0.00159
201 1 0.00271
217 1 0.00129
263 1 0.00133
355 1 0.00294
462 1 0.00353
680 1 0.00345
833 1 0.00357
896 1 0.0035
1060 1 0.00366
1270 1 0.00362
1790 1 0.00362
3040 1 0.00364
3940 1 0.00366
4150 1 0.00368
4320 1 0.00365
4760 1 0.00369
5560 1 0.00368
6170 1 0.00366
6210 1 0.00366
8700 1 0.00368
9240 1 0.00368
10400 1 0.00368
14200 1 0.00372
17400 1 0.00371
17700 1 0.0037
18100 1 0.0037
23600 1 0.0037
24700 1 0.0037
25300 1 0.00372
28400 1 0.00372
35500 1 0.00371
36500 1 0.00371
36800 1 0.00371
37900 1 0.00371
39900 1 0.0037
41400 1 0.0037
53200 1 0.0037
53600 1 0.00372
56000 1 0.00372
56700 1 0.0037
60400 1 0.00372
65500 1 0.00372
68200 1 0.00372
69100 1 0.00372
69500 1 0.0037
74000 1 0.0037
74600 1 0.00372
78200 1 0.0037
91700 1 0.00371
99800 1 0.00371
129000 1 0.00371
134000 1 0.00371
152000 1 0.00371
155000 1 0.00371
156000 1 0.00371
174000 1 0.00371
177000 1 0.00371
186000 1 0.00371
189000 1 0.00371
274000 1 0.00371
275000 1 0.00371
277000 1 0.00371
290000 1 0.00371
307000 1 0.00371
309000 1 0.00371
309000 1 0.00371
309000 1 0.00371
325000 1 0.00371
331000 1 0.00371

CL216 ----> CL118

image

No. of shared pairs: :66

CL216 ----> CL38

image

No. of shared pairs: :24