Cluster no. 217

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Cluster is part of supercluster: 62

Cluster characteristics:

size 4380
size_real 4380
ecount 104055
supercluster 62
annotations_summary 0.02% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
pair_completeness 0.624629080118694
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0162100456621005
satellite_probability 4.08013360799726e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatV Ty3-RT TatV Ty3-RT 1 0.00023

clusters with similarity:

Cluster Number of similarity hits
164 196
2 21
184 17
283 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
184 132 0.146
164 38 0.053
2 28 0.0047
233 15 0.0227
283 10 0.0162
3250 6 0.0116
7180 5 0.00981
29 4 0.00178
48 4 0.00109
3440 4 0.00781
8980 4 0.00786
12000 4 0.00787
26300 4 0.00787
31 3 0.000555
66 3 0.000926
16400 3 0.00591
19900 3 0.00589
79100 3 0.00591
6 2 0.000476
9 2 0.000653
18 2 0.000882
72 2 0.00115
74 2 0.00104
102 2 0.000717
104 2 0.00153
123 2 0.00133
134 2 0.00116
161 2 0.00112
169 2 0.00164
177 2 0.00213
210 2 0.00305
215 2 0.00224
260 2 0.00286
6520 2 0.00394
8970 2 0.00393
9750 2 0.00394
10000 2 0.00393
13600 2 0.00393
23000 2 0.00393
26000 2 0.00393
28400 2 0.00394
37500 2 0.00394
39700 2 0.00394
42200 2 0.00394
46800 2 0.00394
52600 2 0.00394
54800 2 0.00394
57900 2 0.00394
61000 2 0.00394
63600 2 0.00394
67900 2 0.00394
72500 2 0.00394
78100 2 0.00394
120000 2 0.00394
136000 2 0.00394
149000 2 0.00394
187000 2 0.00394
226000 2 0.00394
251000 2 0.00394
299000 2 0.00394
308000 2 0.00394
1 1 0.000254
3 1 0.000247
4 1 0.000261
7 1 0.000203
8 1 0.000489
11 1 0.000253
13 1 0.000521
14 1 0.000266
15 1 0.000357
17 1 0.000163
24 1 0.000287
25 1 0.000439
27 1 0.000561
34 1 0.000357
36 1 5e-04
40 1 0.000252
42 1 0.000445
43 1 0.000331
54 1 0.00068
55 1 0.000241
57 1 0.000665
60 1 0.00065
64 1 0.000736
67 1 0.000385
68 1 0.000524
70 1 0.000748
75 1 0.000293
76 1 0.000552
78 1 0.000339
83 1 0.000603
87 1 0.000562
90 1 0.000351
96 1 0.000678
98 1 0.000731
99 1 0.000859
109 1 0.000846
121 1 0.000994
126 1 0.00062
127 1 0.000599
136 1 0.000927
137 1 0.000702
140 1 0.000416
141 1 0.00058
145 1 0.00053
150 1 0.000684
159 1 0.000775
162 1 0.000604
167 1 0.000551
170 1 0.000642
172 1 0.000606
173 1 0.00101
180 1 0.0011
183 1 0.000791
186 1 0.00057
189 1 0.000689
192 1 0.00162
194 1 0.00147
200 1 0.00075
202 1 0.00123
206 1 0.00105
209 1 0.00142
213 1 0.000636
216 1 0.00129
219 1 0.00125
223 1 0.0012
238 1 0.00127
243 1 0.000913
244 1 0.00163
256 1 0.00135
275 1 0.00176
334 1 0.00187
348 1 0.00183
475 1 0.00193
1580 1 0.00195
2460 1 0.00194
3760 1 0.00196
5150 1 0.00196
5990 1 0.00196
6410 1 0.00196
7980 1 0.00197
9270 1 0.00196
9600 1 0.00197
13300 1 0.00197
15300 1 0.00197
15800 1 0.00197
18400 1 0.00197
19400 1 0.00196
21000 1 0.00197
22100 1 0.00197
23700 1 0.00197
24800 1 0.00197
25000 1 0.00197
27400 1 0.00197
29100 1 0.00197
32400 1 0.00197
32800 1 0.00197
35300 1 0.00197
37100 1 0.00197
40700 1 0.00197
40800 1 0.00197
40900 1 0.00197
43700 1 0.00197
44000 1 0.00197
49300 1 0.00197
51700 1 0.00197
53800 1 0.00197
54500 1 0.00197
55200 1 0.00197
55500 1 0.00197
59400 1 0.00197
60600 1 0.00197
60900 1 0.00197
61500 1 0.00197
64000 1 0.00197
64300 1 0.00197
66700 1 0.00197
66800 1 0.00197
69300 1 0.00197
69800 1 0.00197
74800 1 0.00197
75000 1 0.00197
75700 1 0.00197
77100 1 0.00197
81400 1 0.00197
82800 1 0.00197
84400 1 0.00197
91600 1 0.00197
96800 1 0.00197
97300 1 0.00197
103000 1 0.00197
117000 1 0.00197
125000 1 0.00197
135000 1 0.00197
138000 1 0.00197
144000 1 0.00197
145000 1 0.00197
167000 1 0.00197
168000 1 0.00197
169000 1 0.00197
175000 1 0.00197
176000 1 0.00197
188000 1 0.00197
194000 1 0.00197
202000 1 0.00197
223000 1 0.00197
231000 1 0.00197
231000 1 0.00197
232000 1 0.00197
234000 1 0.00197
242000 1 0.00197
244000 1 0.00197
257000 1 0.00197
258000 1 0.00197
296000 1 0.00197
299000 1 0.00197
304000 1 0.00197
315000 1 0.00197
318000 1 0.00197
319000 1 0.00197
334000 1 0.00197
335000 1 0.00197

CL217 ----> CL184

image

No. of shared pairs: :132

CL217 ----> CL164

image

No. of shared pairs: :38

CL217 ----> CL2

image

No. of shared pairs: :28

CL217 ----> CL233

image

No. of shared pairs: :15

CL217 ----> CL283

image

No. of shared pairs: :10