Cluster no. 218

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Cluster is part of supercluster: 117

Cluster characteristics:

size 4374
size_real 4374
ecount 94059
supercluster 117
annotations_summary 10.45% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.829360100376412
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0523548239597622
satellite_probability 3.97148836105161e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 457 0.1

clusters with similarity:

Cluster Number of similarity hits
19 106
82 90
129 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
82 78 0.0674
19 53 0.0262
416 5 0.0209
6840 5 0.024
7 4 0.000866
342 4 0.0141
14 3 0.000866
3 2 0.000535
15 2 8e-04
17 2 0.000342
29 2 0.00103
31 2 0.000392
41 2 0.000648
57 2 0.00167
58 2 0.00198
131 2 0.00433
137 2 0.00178
181 2 0.00213
199 2 0.00427
1770 2 0.00932
42200 2 0.00976
140000 2 0.00976
268000 2 0.00976
299000 2 0.00976
2 1 0.000177
11 1 0.000274
13 1 0.000619
16 1 0.000375
30 1 0.000269
33 1 0.000679
36 1 0.000588
43 1 0.000367
45 1 0.000359
47 1 0.000382
50 1 0.00056
54 1 0.000856
56 1 0.00235
59 1 0.000794
60 1 0.000808
61 1 0.00056
67 1 0.000436
73 1 0.000979
74 1 0.00062
76 1 0.000663
84 1 0.000584
85 1 0.00067
86 1 0.000385
99 1 0.00116
102 1 0.000402
107 1 0.00113
111 1 0.000371
113 1 0.000686
114 1 0.00122
117 1 0.000741
119 1 0.00137
128 1 0.00112
130 1 0.000455
135 1 0.000873
142 1 0.000992
152 1 0.000523
153 1 0.000678
166 1 0.00115
167 1 0.00066
169 1 0.00109
170 1 0.000796
175 1 0.00129
201 1 0.00328
206 1 0.00153
213 1 0.000786
219 1 0.002
222 1 0.00176
262 1 0.00388
280 1 0.00255
399 1 0.00441
449 1 0.00405
1740 1 0.00472
2460 1 0.00474
2580 1 0.00477
2650 1 0.00484
6800 1 0.00483
12200 1 0.00483
25800 1 0.00487
34000 1 0.00488
35600 1 0.00485
41500 1 0.00488
56200 1 0.00487
62200 1 0.00487
70500 1 0.00489
83100 1 0.00487
91900 1 0.00488
135000 1 0.00488
145000 1 0.00488
180000 1 0.00488
221000 1 0.00488
326000 1 0.00488
342000 1 0.00488

CL218 ----> CL82

image

No. of shared pairs: :78

CL218 ----> CL19

image

No. of shared pairs: :53