Cluster no. 219

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Cluster is part of supercluster: 118

Cluster characteristics:

size 4254
size_real 4254
ecount 56863
supercluster 118
annotations_summary 5.27% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
5.10% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
2.35% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
2.16% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
1.46% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
0.87% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.87% Class_I/LTR/Ty1_copia/Tork:Ty1-RT
0.66% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
0.61% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.61% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.47% Class_I/LTR/Ty1_copia/Bryco:Ty1-RT
0.45% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
0.35% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.28% Class_I/LTR/Ty1_copia/Tork:Ty1-PROT
0.26% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
0.26% Class_I/LTR/Ty1_copia/Ale:Ty1-PROT
0.24% organelle/mitochondria
0.19% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-INT
0.16% Class_I/LTR/Ty1_copia/SIRE:Ty1-RH
0.16% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
0.16% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
0.12% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RT
0.09% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.09% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-RH
0.07% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-RT
0.05% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-GAG
0.05% Class_I/LTR/Ty1_copia/Alesia:Ty1-GAG
0.05% Class_I/LTR/Ty1_copia/Ty1-outgroup:Ty1-PROT
0.05% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.02% Class_I/LTR/Ty1_copia/Osser:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/TAR:Ty1-PROT
0.02% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.02% Class_I/LTR/Ty1_copia/Alesia:Ty1-RH
0.02% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.02% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
pair_completeness 0.754950495049505
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.66807710390221
satellite_probability 0.00559431351656918
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 10 0.00235
Ale Ty1-GAG Ale Ty1-GAG 11 0.00259
Alesia Ty1-GAG Alesia Ty1-GAG 2 0.00047
SIRE Ty1-GAG SIRE Ty1-GAG 1 0.00024
Ty1-outgroup Ty1-GAG Ty1-outgroup Ty1-GAG 2 0.00047
Ale Ty1-INT Ale Ty1-INT 26 0.00611
Alesia Ty1-INT Alesia Ty1-INT 37 0.00870
Angela Ty1-INT Angela Ty1-INT 1 0.00024
Bryco Ty1-INT Bryco Ty1-INT 1 0.00024
Gymco-II Ty1-INT Gymco-II Ty1-INT 19 0.00447
Ikeros Ty1-INT Ikeros Ty1-INT 7 0.00165
Ivana Ty1-INT Ivana Ty1-INT 217 0.05101
Osser Ty1-INT Osser Ty1-INT 1 0.00024
SIRE Ty1-INT SIRE Ty1-INT 28 0.00658
TAR Ty1-INT TAR Ty1-INT 4 0.00094
Tork Ty1-INT Tork Ty1-INT 26 0.00611
Ty1-outgroup Ty1-INT Ty1-outgroup Ty1-INT 8 0.00188
Ale Ty1-PROT Ale Ty1-PROT 11 0.00259
Ivana Ty1-PROT Ivana Ty1-PROT 15 0.00353
TAR Ty1-PROT TAR Ty1-PROT 1 0.00024
Tork Ty1-PROT Tork Ty1-PROT 12 0.00282
Ty1-outgroup Ty1-PROT Ty1-outgroup Ty1-PROT 2 0.00047
Ale Ty1-RH Ale Ty1-RH 92 0.02163
Alesia Ty1-RH Alesia Ty1-RH 1 0.00024
Gymco-II Ty1-RH Gymco-II Ty1-RH 4 0.00094
Ivana Ty1-RH Ivana Ty1-RH 62 0.01457
SIRE Ty1-RH SIRE Ty1-RH 7 0.00165
Tork Ty1-RH Tork Ty1-RH 1 0.00024
Ale Ty1-RT Ale Ty1-RT 224 0.05266
Alesia Ty1-RT Alesia Ty1-RT 1 0.00024
Angela Ty1-RT Angela Ty1-RT 7 0.00165
Bryco Ty1-RT Bryco Ty1-RT 20 0.00470
Gymco-I Ty1-RT Gymco-I Ty1-RT 3 0.00071
Gymco-II Ty1-RT Gymco-II Ty1-RT 5 0.00118
Ikeros Ty1-RT Ikeros Ty1-RT 2 0.00047
Ivana Ty1-RT Ivana Ty1-RT 100 0.02351
SIRE Ty1-RT SIRE Ty1-RT 1 0.00024
Tork Ty1-RT Tork Ty1-RT 37 0.00870

clusters with similarity:

Cluster Number of similarity hits
85 5
14 1
74 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2200 15 0.0488
85 6 0.00378
1460 6 0.0194
143 5 0.00342
3980 5 0.0165
2 4 0.000696
7 4 0.000849
48 4 0.00116
159 4 0.0037
257 4 0.00952
1 3 0.000806
19 3 0.00142
84700 3 0.0101
3 2 0.000522
5 2 0.0011
6 2 0.000501
11 2 0.000534
14 2 0.000562
23 2 0.000779
24 2 0.000611
31 2 0.000385
36 2 0.00112
50 2 0.00106
69 2 0.00152
71 2 0.000804
74 2 0.00117
98 2 0.00173
105 2 0.00117
139 2 0.00146
153 2 0.00128
181 2 0.00194
205 2 0.00218
223 2 0.00321
226 2 0.00398
240 2 0.00534
10100 2 0.00668
69200 2 0.0067
8 1 0.000545
13 1 0.000585
16 1 0.000362
17 1 0.000168
20 1 0.000275
21 1 0.000392
22 1 0.000341
27 1 0.000636
30 1 0.000262
39 1 0.000591
44 1 0.000311
46 1 0.000551
51 1 0.000324
53 1 0.000323
54 1 0.000793
57 1 0.000773
58 1 0.000908
59 1 0.000739
70 1 0.000886
72 1 0.000655
75 1 0.000312
76 1 0.000625
78 1 0.000365
81 1 0.000403
88 1 0.000392
91 1 0.00105
93 1 0.000956
113 1 0.000645
115 1 0.000498
119 1 0.00121
125 1 0.000973
128 1 0.00102
130 1 0.000436
136 1 0.00115
140 1 0.000456
145 1 0.000596
148 1 0.000759
162 1 0.000691
168 1 0.000702
172 1 0.000694
182 1 0.000937
189 1 0.000805
194 1 0.00211
197 1 0.000838
198 1 0.00143
204 1 0.00165
212 1 0.0016
217 1 0.00125
218 1 0.002
220 1 0.00146
224 1 0.00262
231 1 0.00208
234 1 0.00219
235 1 0.00108
243 1 0.00113
250 1 0.00222
278 1 0.00233
290 1 0.00277
326 1 0.00244
353 1 0.00283
411 1 0.00306
430 1 0.00267
947 1 0.00316
1300 1 0.00325
1420 1 0.00326
1620 1 0.00329
2160 1 0.0033
2440 1 0.00325
3630 1 0.00327
11700 1 0.00333
13500 1 0.00334
15800 1 0.00334
16200 1 0.00334
21000 1 0.00334
23300 1 0.00335
23500 1 0.00334
24700 1 0.00334
32000 1 0.00336
32200 1 0.00334
32300 1 0.00336
35300 1 0.00334
37300 1 0.00334
38000 1 0.00336
51800 1 0.00335
53600 1 0.00335
61000 1 0.00336
68400 1 0.00336
68700 1 0.00336
71100 1 0.00336
71800 1 0.00336
76100 1 0.00335
76500 1 0.00335
80600 1 0.00335
84100 1 0.00336
102000 1 0.00336
106000 1 0.00336
113000 1 0.00336
156000 1 0.00336
161000 1 0.00336
173000 1 0.00336
179000 1 0.00336
185000 1 0.00336
185000 1 0.00336
205000 1 0.00336
216000 1 0.00336
230000 1 0.00336
239000 1 0.00336
241000 1 0.00336
248000 1 0.00336
258000 1 0.00336
268000 1 0.00336
275000 1 0.00336
293000 1 0.00336
294000 1 0.00336
349000 1 0.00336

CL219 ----> CL2195

image

No. of shared pairs: :15