Cluster no. 220

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Cluster is part of supercluster: 8

Cluster characteristics:

size 4212
size_real 4212
ecount 61943
supercluster 8
annotations_summary 0.26% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-GAG
0.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
pair_completeness 0.690208667736758
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000949667616334283
satellite_probability 1.94805139038498e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatII Ty3-GAG TatII Ty3-GAG 11 0.00261
TatV Ty3-GAG TatV Ty3-GAG 2 0.00047

clusters with similarity:

Cluster Number of similarity hits
14 414
15 350
70 15

clusters connected through mates:

Cluster Number of shared
read pairs
k
15 308 0.115
14 200 0.0549
70 10 0.00821
120 10 0.00607
33 5 0.00302
180 5 0.00637
19800 4 0.0103
11600 3 0.00769
3 2 0.00051
7 2 0.000417
26 2 0.000837
39 2 0.00112
52 2 0.000924
53 2 0.000629
60 2 0.00141
74 2 0.00111
82 2 0.00149
134 2 0.00124
8000 2 0.00515
9470 2 0.00515
12800 2 0.00514
25100 2 0.00516
65100 2 0.00516
71500 2 0.00516
87200 2 0.00517
121000 2 0.00517
199000 2 0.00517
4 1 0.000269
6 1 0.000245
8 1 0.00052
9 1 0.00034
11 1 0.000261
13 1 0.000556
16 1 0.000351
17 1 0.000166
18 1 0.000466
19 1 0.000453
21 1 0.000379
22 1 0.000331
23 1 0.000376
29 1 0.000469
31 1 0.000189
41 1 0.000306
42 1 0.00047
46 1 0.000525
48 1 0.000283
54 1 0.000741
61 1 0.000508
62 1 0.000334
67 1 0.000404
68 1 0.000559
72 1 0.000619
73 1 0.000831
76 1 0.000592
88 1 0.000379
92 1 0.00102
101 1 0.000536
105 1 0.000555
111 1 0.000348
113 1 0.00061
119 1 0.00109
122 1 0.000636
130 1 0.00042
133 1 0.000325
139 1 0.000685
147 1 0.000338
150 1 0.000745
158 1 0.000757
163 1 0.000609
175 1 0.00104
179 1 0.00103
185 1 0.000861
206 1 0.0012
211 1 0.00113
213 1 0.000688
219 1 0.00146
226 1 0.00169
237 1 0.00143
259 1 0.00169
261 1 0.0023
397 1 0.00222
870 1 0.0025
1530 1 0.00253
1700 1 0.00254
2370 1 0.00255
10400 1 0.00258
15100 1 0.00257
20200 1 0.00258
25000 1 0.00258
32500 1 0.00258
38900 1 0.00258
42200 1 0.00258
42600 1 0.00258
45500 1 0.00259
63900 1 0.00258
82600 1 0.00258
144000 1 0.00258
156000 1 0.00258
167000 1 0.00258
169000 1 0.00258
187000 1 0.00258
317000 1 0.00258
340000 1 0.00258
346000 1 0.00258

CL220 ----> CL15

image

No. of shared pairs: :308

CL220 ----> CL14

image

No. of shared pairs: :200

CL220 ----> CL70

image

No. of shared pairs: :10

CL220 ----> CL120

image

No. of shared pairs: :10