Cluster no. 221

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Cluster is part of supercluster: 119

Cluster characteristics:

size 4139
size_real 4139
ecount 24976
supercluster 119
annotations_summary 5.24% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII
0.82% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.10% Class_II/Subclass_2/Helitron:Helitron-HEL2
0.10% Class_II/Subclass_2/Helitron:Helitron-HEL1
0.02% organelle/plastid
pair_completeness 0.795661605206074
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.359098618851466
satellite_probability 1.14020606764843e-08
consensus None
TAREAN_annotation Other
orientation_score 0.999720659244184

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00024
Helitron Helitron-HEL1 Helitron Helitron-HEL1 4 0.00097
Helitron Helitron-HEL2 Helitron Helitron-HEL2 4 0.00097
CRM Ty3-CHDII CRM Ty3-CHDII 217 0.05243
CRM Ty3-INT CRM Ty3-INT 34 0.00821

clusters with similarity:

Cluster Number of similarity hits
38 1
157 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1820 7 0.0282
191 6 0.00519
794 6 0.0236
6530 5 0.0209
23 4 0.0016
463 4 0.016
2980 4 0.0166
18300 4 0.0168
30200 4 0.0168
17 3 0.00051
35 3 0.000889
52 3 0.00149
100 3 0.00261
934 3 0.012
2920 3 0.0123
4060 3 0.0124
10500 3 0.0126
10600 3 0.0126
13600 3 0.0126
17800 3 0.0126
19500 3 0.0126
21200 3 0.0127
47200 3 0.0127
55400 3 0.0127
77900 3 0.0127
6 2 0.000509
9 2 0.000716
14 2 0.000572
38 2 0.00143
47 2 0.000755
51 2 0.000662
85 2 0.00131
86 2 0.00076
162 2 0.00144
1200 2 0.00786
1350 2 0.00825
4490 2 0.00828
5410 2 0.00832
8930 2 0.00835
10000 2 0.00837
13700 2 0.00844
14200 2 0.0084
16700 2 0.00842
20100 2 0.00842
35500 2 0.00846
35700 2 0.00846
41000 2 0.00842
42700 2 0.00846
54400 2 0.00844
58100 2 0.00844
65700 2 0.00844
65700 2 0.00844
66200 2 0.00844
69600 2 0.00844
77500 2 0.00844
101000 2 0.00846
117000 2 0.00846
184000 2 0.00846
213000 2 0.00846
237000 2 0.00846
277000 2 0.00846
286000 2 0.00846
346000 2 0.00846
2 1 0.000176
3 1 0.000265
4 1 0.00028
5 1 0.000569
10 1 0.00064
15 1 0.000395
18 1 0.000501
19 1 0.000486
24 1 0.000311
29 1 0.000505
50 1 0.000551
66 1 0.000337
74 1 0.000608
78 1 0.000374
88 1 0.000402
91 1 0.00113
93 1 0.00102
97 1 0.00057
99 1 0.00112
102 1 0.000397
123 1 0.000808
124 1 0.000904
137 1 0.000867
142 1 0.000962
147 1 0.000356
149 1 0.00111
151 1 0.000906
152 1 0.000515
157 1 0.00101
163 1 0.000671
171 1 0.00094
180 1 0.00157
187 1 0.00117
192 1 0.00289
211 1 0.00136
568 1 0.00407
863 1 0.00397
2650 1 0.0041
2770 1 0.00414
2900 1 0.00415
3200 1 0.00417
3410 1 0.00416
4760 1 0.0042
4800 1 0.00417
5660 1 0.00414
5950 1 0.0042
6520 1 0.00419
6570 1 0.00418
7320 1 0.00417
8370 1 0.00419
9580 1 0.00422
12300 1 0.00418
12400 1 0.00421
14000 1 0.0042
14200 1 0.00422
14600 1 0.0042
15200 1 0.0042
15500 1 0.00418
16600 1 0.00419
19900 1 0.00421
20400 1 0.00419
21000 1 0.00419
22400 1 0.00422
24100 1 0.00422
24400 1 0.00422
27000 1 0.00424
28100 1 0.0042
28200 1 0.00422
28300 1 0.0042
30000 1 0.00421
32200 1 0.00421
34400 1 0.00421
34800 1 0.00423
36200 1 0.00423
36300 1 0.00423
39800 1 0.00423
41200 1 0.00423
42000 1 0.00423
43400 1 0.00423
43900 1 0.00421
44700 1 0.00423
48600 1 0.00422
51400 1 0.00424
57600 1 0.00422
61200 1 0.00422
66700 1 0.00424
74900 1 0.00422
75900 1 0.00424
77500 1 0.00422
79400 1 0.00422
80600 1 0.00424
81700 1 0.00424
83600 1 0.00422
157000 1 0.00423
169000 1 0.00423
171000 1 0.00423
178000 1 0.00423
186000 1 0.00423
191000 1 0.00423
202000 1 0.00423
203000 1 0.00423
231000 1 0.00423
235000 1 0.00423
241000 1 0.00423
250000 1 0.00423
251000 1 0.00423
270000 1 0.00423
271000 1 0.00423
295000 1 0.00423
303000 1 0.00423
307000 1 0.00423
320000 1 0.00423
323000 1 0.00423
327000 1 0.00423