Cluster no. 222

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Cluster is part of supercluster: 120

Cluster characteristics:

size 4061
size_real 4061
ecount 95074
supercluster 120
annotations_summary 0.02% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
pair_completeness 0.696324143692565
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0595912336862842
satellite_probability 8.23266535769169e-19
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Gymco-II Ty1-INT Gymco-II Ty1-INT 1 0.00025

clusters with similarity:

Cluster Number of similarity hits
19 42
82 27
28 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
19 146 0.0668
82 79 0.06
416 14 0.0351
1270 6 0.016
6 5 0.00123
36 5 0.00269
4500 5 0.0136
11 4 0.00105
14 3 0.000828
40 3 0.000783
43 3 0.00104
44 3 0.000915
45 3 0.00102
85 3 0.00181
91 3 0.00295
100 3 0.00235
184 3 0.00393
1000 3 0.00799
3040 3 0.00808
25000 3 0.0082
61400 3 0.00822
3 2 0.000513
7 2 0.000419
12 2 0.000463
16 2 0.000708
20 2 0.000539
22 2 0.000667
23 2 0.000759
24 2 0.000599
26 2 0.000845
28 2 0.00115
48 2 0.00057
51 2 0.000635
59 2 0.00141
70 2 0.00167
76 2 0.0012
77 2 0.00126
96 2 0.0015
101 2 0.00109
112 2 0.00199
125 2 0.00183
142 2 0.00171
156 2 0.00169
197 2 0.00159
272 2 0.00275
3630 2 0.00539
11200 2 0.00546
24400 2 0.00546
31000 2 0.00549
77600 2 0.00548
92700 2 0.00549
131000 2 0.00549
215000 2 0.00549
232000 2 0.00549
263000 2 0.00549
294000 2 0.00549
316000 2 0.00549
1 1 0.000264
4 1 0.000271
8 1 0.000526
9 1 0.000342
13 1 0.000563
15 1 0.000376
17 1 0.000166
18 1 0.00047
21 1 0.000382
25 1 0.000469
29 1 0.000474
30 1 0.000258
34 1 0.000376
39 1 0.000569
46 1 0.000531
47 1 0.00036
49 1 0.000499
52 1 0.000467
53 1 0.000317
55 1 0.00025
57 1 0.000735
71 1 0.000391
73 1 0.000847
79 1 0.00037
84 1 0.000534
88 1 0.000382
90 1 0.000369
93 1 0.000899
95 1 0.000775
99 1 0.000979
104 1 0.000856
106 1 0.000579
110 1 0.000825
115 1 0.000482
117 1 0.000663
119 1 0.00112
122 1 0.000645
130 1 0.000424
134 1 0.00063
137 1 0.00078
138 1 0.000928
139 1 0.000696
141 1 0.000633
146 1 0.000925
152 1 0.000483
153 1 0.000612
160 1 0.000838
168 1 0.00067
171 1 0.000839
183 1 0.000892
190 1 0.000903
203 1 0.00111
218 1 0.00176
230 1 0.00193
238 1 0.00155
239 1 0.0015
245 1 0.00104
266 1 0.00183
291 1 0.00184
301 1 0.00213
335 1 0.00236
336 1 0.00217
349 1 0.00222
383 1 0.00228
422 1 0.00252
2830 1 0.00271
3550 1 0.0027
4290 1 0.00272
5470 1 0.00271
6030 1 0.0027
7480 1 0.00272
7830 1 0.00272
11300 1 0.00272
12000 1 0.00274
12200 1 0.00273
12800 1 0.00273
13700 1 0.00274
19800 1 0.00274
25900 1 0.00275
36900 1 0.00274
39900 1 0.00274
44800 1 0.00274
48500 1 0.00274
56600 1 0.00274
58000 1 0.00274
67100 1 0.00275
70000 1 0.00274
70800 1 0.00275
76500 1 0.00275
84000 1 0.00275
95400 1 0.00274
96400 1 0.00274
97900 1 0.00274
98400 1 0.00274
170000 1 0.00274
192000 1 0.00274
219000 1 0.00274
220000 1 0.00274
228000 1 0.00274
242000 1 0.00274
255000 1 0.00274
264000 1 0.00274
308000 1 0.00274

CL222 ----> CL19

image

No. of shared pairs: :146

CL222 ----> CL82

image

No. of shared pairs: :79

CL222 ----> CL416

image

No. of shared pairs: :14