Cluster no. 223

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Cluster is part of supercluster: 121

Cluster characteristics:

size 3973
size_real 3973
ecount 72344
supercluster 121
annotations_summary 1.06% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
0.73% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.10% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.08% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
pair_completeness 0.717682663207955
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00931286181726655
satellite_probability 1.10115207681596e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-GAG Ivana Ty1-GAG 42 0.01057
SIRE Ty1-GAG SIRE Ty1-GAG 29 0.00730
Ale Ty1-INT Ale Ty1-INT 1 0.00025
Angela Ty1-INT Angela Ty1-INT 1 0.00025
Gymco-II Ty1-INT Gymco-II Ty1-INT 3 0.00076
Ivana Ty1-INT Ivana Ty1-INT 4 0.00101

clusters with similarity:

Cluster Number of similarity hits
140 156
111 69
3 25
159 25
151 10
37 6
25 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
111 133 0.0472
151 37 0.031
140 10 0.0045
17 8 0.00134
159 7 0.0063
7040 5 0.0151
3 4 0.00104
51 4 0.00128
27900 4 0.0122
2 3 0.000519
18 3 0.00144
63 3 0.000927
68 3 0.00174
189 3 0.00236
232 3 0.00419
1060 3 0.00873
6 2 0.000497
7 2 0.000422
10 2 0.00121
11 2 0.00053
19 2 0.000931
23 2 0.00077
24 2 0.000606
25 2 0.000954
43 2 0.000703
49 2 0.00102
59 2 0.00145
78 2 0.000723
90 2 0.000749
119 2 0.00234
122 2 0.00132
156 2 0.00174
197 2 0.00163
219 2 0.00321
12200 2 0.00611
57000 2 0.0061
239000 2 0.00611
325000 2 0.00611
342000 2 0.00611
5 1 0.000541
12 1 0.000233
14 1 0.000279
15 1 0.000381
20 1 0.000272
21 1 0.000388
22 1 0.000337
26 1 0.000429
34 1 0.000382
40 1 0.000264
47 1 0.000365
48 1 0.000288
50 1 0.000524
53 1 0.00032
60 1 0.000735
61 1 0.000524
66 1 0.000327
67 1 0.000414
72 1 0.000642
74 1 0.000576
75 1 0.000309
76 1 0.000613
81 1 0.000399
83 1 0.000676
85 1 0.000619
86 1 0.000367
93 1 0.00093
99 1 0.00102
100 1 0.000806
102 1 0.000383
106 1 0.000592
112 1 0.00103
113 1 0.000633
115 1 0.000491
118 1 0.000903
120 1 0.00063
126 1 0.000697
130 1 0.000431
131 1 0.00171
134 1 0.000645
137 1 0.000804
138 1 0.000961
144 1 0.00122
150 1 0.000779
160 1 0.000865
165 1 0.000673
170 1 0.000726
173 1 0.00124
176 1 0.00124
177 1 0.00132
178 1 0.00127
200 1 0.000867
205 1 0.00105
212 1 0.00153
217 1 0.0012
227 1 0.0016
229 1 0.00107
237 1 0.00156
251 1 0.00201
273 1 0.00132
276 1 0.00141
324 1 0.0021
327 1 0.00236
365 1 0.0025
3140 1 0.00298
3280 1 0.00299
4410 1 0.00302
4440 1 0.00302
8430 1 0.00302
8900 1 0.00303
11000 1 0.00304
14600 1 0.00304
16800 1 0.00305
17300 1 0.00303
19000 1 0.00304
21400 1 0.00305
31800 1 0.00305
38700 1 0.00305
39200 1 0.00304
44200 1 0.00305
52100 1 0.00306
65000 1 0.00305
67700 1 0.00305
72600 1 0.00305
76200 1 0.00305
77100 1 0.00305
82700 1 0.00305
86700 1 0.00305
177000 1 0.00305
181000 1 0.00305
195000 1 0.00305
240000 1 0.00305
240000 1 0.00305
247000 1 0.00305
253000 1 0.00305
266000 1 0.00305
289000 1 0.00305
334000 1 0.00305
342000 1 0.00305

CL223 ----> CL111

image

No. of shared pairs: :133

CL223 ----> CL151

image

No. of shared pairs: :37

CL223 ----> CL140

image

No. of shared pairs: :10