Cluster no. 224

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Cluster is part of supercluster: 30

Cluster characteristics:

size 3911
size_real 3911
ecount 63655
supercluster 30
annotations_summary 99.97% organelle/plastid
pair_completeness 0.917156862745098
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000259067357512953
satellite_probability 1.97433114407246e-24
consensus None
TAREAN_annotation Other
orientation_score 0.996041441162827

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3910 1

clusters with similarity:

Cluster Number of similarity hits
131 40

clusters connected through mates:

Cluster Number of shared
read pairs
k
131 42 0.123
9 2 0.000757
20 2 0.000583
24 2 0.000653
27 2 0.00147
104 2 0.00225
188 2 0.0105
201 2 0.0108
341000 2 0.0234
3 1 0.000276
4 1 0.000293
10 1 0.000708
21 1 0.000428
33 1 0.000739
36 1 0.000633
40 1 0.000282
46 1 0.000624
51 1 0.000348
53 1 0.000347
55 1 0.000268
66 1 0.000355
73 1 0.00111
79 1 0.000412
81 1 0.000441
86 1 0.000403
95 1 0.000989
99 1 0.00135
102 1 0.000422
121 1 0.00171
122 1 0.000787
126 1 0.000839
133 1 0.00036
139 1 0.000863
140 1 0.000505
153 1 0.000738
155 1 0.00124
169 1 0.00125
173 1 0.00177
176 1 0.00177
191 1 0.000995
192 1 0.00513
200 1 0.0011
215 1 0.00211
219 1 0.00262
261 1 0.00749
262 1 0.00722
275 1 0.00678
404 1 0.00855
1770 1 0.0104
6820 1 0.0113
12900 1 0.0117
24300 1 0.0115
24300 1 0.0116
37100 1 0.0116
48800 1 0.0118
58000 1 0.0116
59400 1 0.0116
63200 1 0.0118
67500 1 0.0118
75500 1 0.0116
124000 1 0.0117
248000 1 0.0117

CL224 ----> CL131

image

No. of shared pairs: :42