Cluster no. 225

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Cluster is part of supercluster: 122

Cluster characteristics:

size 3898
size_real 3898
ecount 29905
supercluster 122
annotations_summary 18.21% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-INT
12.13% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
7.47% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
5.80% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-PROT
2.69% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
1.56% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-aRH
0.31% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.10% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RH
0.08% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT
0.03% organelle/mitochondria
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.03% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-INT
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-INT
pair_completeness 0.814711359404097
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00025654181631606
satellite_probability 2.15940292115794e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 1 0.00026
Ale Ty1-INT Ale Ty1-INT 1 0.00026
TatII Ty3-INT TatII Ty3-INT 710 0.18214
TatIII Ty3-INT TatIII Ty3-INT 1 0.00026
TatIV_Ogre Ty3-INT TatIV_Ogre Ty3-INT 1 0.00026
TatV Ty3-INT TatV Ty3-INT 3 0.00077
TatII Ty3-PROT TatII Ty3-PROT 226 0.05798
TatII Ty3-RH TatII Ty3-RH 291 0.07465
Tekay Ty3-RH Tekay Ty3-RH 4 0.00103
Chlamyvir Ty3-RT Chlamyvir Ty3-RT 1 0.00026
TatII Ty3-RT TatII Ty3-RT 473 0.12134
TatII Ty3-aRH TatII Ty3-aRH 61 0.01565
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 105 0.02694
TatV Ty3-aRH TatV Ty3-aRH 12 0.00308

clusters with similarity:

Cluster Number of similarity hits
5 51
33 31
93 11
60 5
70 5
202 2
10 1
17 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
33 91 0.062
5 30 0.0174
70 12 0.0116
10 6 0.00393
4480 5 0.0248
13800 5 0.0248
4360 4 0.0198
884 3 0.014
80600 3 0.015
3 2 0.000535
29 2 0.00103
82 2 0.00174
4260 2 0.00973
4450 2 0.0098
19600 2 0.0099
112000 2 0.01
187000 2 0.01
201000 2 0.01
291000 2 0.01
316000 2 0.01
1 1 0.000276
4 1 0.000283
6 1 0.000257
7 1 0.000217
9 1 0.000363
12 1 0.000241
16 1 0.000376
17 1 0.000171
18 1 0.00051
24 1 0.000315
27 1 0.000678
31 1 0.000196
34 1 0.000401
36 1 0.00059
40 1 0.000273
41 1 0.000324
45 1 0.000359
47 1 0.000383
51 1 0.000335
57 1 0.000836
58 1 0.000997
63 1 0.000322
66 1 0.000341
67 1 0.000437
69 1 0.00082
75 1 0.000322
78 1 0.000379
84 1 0.000586
91 1 0.00117
96 1 0.000857
102 1 0.000403
108 1 0.00102
109 1 0.00114
116 1 0.000454
128 1 0.00113
140 1 0.000477
153 1 0.00068
173 1 0.00147
199 1 0.00216
211 1 0.00143
230 1 0.00282
234 1 0.00279
304 1 0.00418
317 1 0.00407
777 1 0.00448
1140 1 0.00473
1180 1 0.00464
1460 1 0.00474
2520 1 0.0049
4230 1 0.00491
4450 1 0.00493
4470 1 0.00493
5540 1 0.00493
6320 1 0.00491
10100 1 0.00491
14400 1 0.00499
14800 1 0.00494
16200 1 0.00499
20300 1 0.00498
24900 1 0.00499
43600 1 0.00498
50500 1 0.00499
53200 1 0.00501
54200 1 0.00499
63600 1 0.00499
73000 1 0.00499
74200 1 0.00501
76000 1 0.00499
84700 1 0.00501
101000 1 0.005
104000 1 0.005
129000 1 0.005
225000 1 0.005
279000 1 0.005
283000 1 0.005
283000 1 0.005
313000 1 0.005
326000 1 0.005
331000 1 0.005

CL225 ----> CL33

image

No. of shared pairs: :91

CL225 ----> CL5

image

No. of shared pairs: :30

CL225 ----> CL70

image

No. of shared pairs: :12