Cluster no. 227

Go back to cluster table

Cluster is part of supercluster: 124

Cluster characteristics:

size 3759
size_real 3759
ecount 36931
supercluster 124
annotations_summary 10.83% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
6.41% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-PROT
1.41% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
pair_completeness 0.725103258375402
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00133014099494546
satellite_probability 9.81425038973844e-23
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-GAG CRM Ty3-GAG 407 0.108
CRM Ty3-PROT CRM Ty3-PROT 241 0.064
CRM Ty3-RH CRM Ty3-RH 53 0.014

clusters with similarity:

Cluster Number of similarity hits
17 1
36 1
89 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
2060 9 0.0292
10900 6 0.0198
17 5 0.000841
66 4 0.00132
185 4 0.00372
20900 4 0.0132
12 3 0.000705
15 3 0.00116
29 3 0.00147
33 3 0.00191
72 3 0.00196
181 3 0.0029
1360 3 0.00969
3900 3 0.00985
7580 3 0.00987
32600 3 0.00995
47100 3 0.00997
1 2 0.000537
2 2 0.000348
3 2 0.000521
7 2 0.000424
10 2 0.00123
18 2 0.00097
22 2 0.000681
23 2 0.000778
34 2 0.000771
44 2 0.000622
48 2 0.00058
63 2 0.000623
87 2 0.00127
99 2 0.00209
152 2 0.000997
190 2 0.00192
245 2 0.00223
1020 2 0.00631
3850 2 0.00655
7150 2 0.00664
7210 2 0.0066
8900 2 0.00661
13800 2 0.00662
14400 2 0.00662
24600 2 0.00662
33900 2 0.00666
42700 2 0.00666
45500 2 0.00664
52100 2 0.00664
69400 2 0.00664
75500 2 0.00664
102000 2 0.00666
155000 2 0.00666
228000 2 0.00666
262000 2 0.00666
280000 2 0.00666
287000 2 0.00666
323000 2 0.00666
326000 2 0.00666
348000 2 0.00666
4 1 0.000276
6 1 0.00025
9 1 0.00035
19 1 0.000472
20 1 0.000274
24 1 0.000305
30 1 0.000262
31 1 0.000192
36 1 0.000557
37 1 0.000301
38 1 0.000686
40 1 0.000266
46 1 0.00055
51 1 0.000324
54 1 0.000791
57 1 0.000771
58 1 0.000906
64 1 0.000867
73 1 0.000895
74 1 0.000585
75 1 0.000312
78 1 0.000365
81 1 0.000403
85 1 0.000629
86 1 0.000371
88 1 0.000392
96 1 0.000789
98 1 0.000861
111 1 0.000358
121 1 0.00125
124 1 0.000854
129 1 0.00114
130 1 0.000436
134 1 0.000656
149 1 0.00104
150 1 0.000796
157 1 0.000947
163 1 0.000643
167 1 0.000621
169 1 0.000986
174 1 0.000743
176 1 0.00128
186 1 0.000646
196 1 0.000749
213 1 0.000732
223 1 0.0016
229 1 0.0011
242 1 0.00132
252 1 0.00176
302 1 0.00247
303 1 0.00251
912 1 0.00311
1440 1 0.00319
1720 1 0.00324
4830 1 0.00329
5400 1 0.00329
6810 1 0.00327
7800 1 0.00329
8350 1 0.00329
9000 1 0.00331
9080 1 0.00331
9700 1 0.00331
14300 1 0.00331
16800 1 0.00332
18000 1 0.00332
21000 1 0.00332
22200 1 0.00332
23400 1 0.00331
23600 1 0.00331
28600 1 0.00331
28800 1 0.00332
32900 1 0.00333
36200 1 0.00333
38200 1 0.00332
38600 1 0.00332
39900 1 0.00333
40500 1 0.00333
42100 1 0.00333
51000 1 0.00333
60500 1 0.00332
62700 1 0.00333
63700 1 0.00332
64900 1 0.00332
67700 1 0.00332
71800 1 0.00332
82900 1 0.00332
84100 1 0.00333
116000 1 0.00333
124000 1 0.00333
127000 1 0.00333
130000 1 0.00333
147000 1 0.00333
147000 1 0.00333
154000 1 0.00333
164000 1 0.00333
193000 1 0.00333
196000 1 0.00333
214000 1 0.00333
257000 1 0.00333
261000 1 0.00333
269000 1 0.00333
274000 1 0.00333
274000 1 0.00333
293000 1 0.00333
316000 1 0.00333
320000 1 0.00333
344000 1 0.00333