Cluster no. 228

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Cluster is part of supercluster: 125

Cluster characteristics:

size 3738
size_real 3738
ecount 311014
supercluster 125
annotations_summary 10.14% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIII:Ty3-PROT
pair_completeness 0.778306374881066
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0543071161048689
satellite_probability 8.20373400173541e-20
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIII Ty3-PROT TatIII Ty3-PROT 379 0.1

clusters with similarity:

Cluster Number of similarity hits
43 826
57 488
52 38
106 12

clusters connected through mates:

Cluster Number of shared
read pairs		 k
43 162 0.0589
57 119 0.0967
20 3 0.000839
46 3 0.00171
72 3 0.00205
17 2 0.00034
22 2 0.000697
42 2 0.00101
108 2 0.00197
131 2 0.00408
179 2 0.00243
4 1 0.000281
7 1 0.000215
9 1 0.000358
10 1 0.000641
13 1 0.000608
18 1 0.000501
26 1 0.000447
30 1 0.000267
32 1 0.000603
34 1 0.000396
47 1 0.000378
50 1 0.000551
51 1 0.000331
52 1 0.000497
54 1 0.000835
67 1 0.000431
69 1 0.000798
74 1 0.000609
78 1 0.000374
84 1 0.000574
92 1 0.00121
98 1 0.000914
101 1 0.000584
103 1 0.000458
105 1 0.000607
106 1 0.000626
111 1 0.000367
112 1 0.00114
114 1 0.00118
125 1 0.00104
130 1 0.000449
132 1 0.00104
144 1 0.00138
149 1 0.00112
163 1 0.000672
191 1 0.000867
206 1 0.00147
250 1 0.00259
263 1 0.00139
7070 1 0.00426
11200 1 0.00426
22700 1 0.00426
51500 1 0.00428
57700 1 0.00428
72900 1 0.00428
72900 1 0.00428
76400 1 0.00428
112000 1 0.00427
116000 1 0.00427
178000 1 0.00427
280000 1 0.00427
322000 1 0.00427
348000 1 0.00427

CL228 ----> CL43

image

No. of shared pairs: :162

CL228 ----> CL57

image

No. of shared pairs: :119