Cluster no. 229

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Cluster is part of supercluster: 126

Cluster characteristics:

size 3681
size_real 3681
ecount 20925
supercluster 126
annotations_summary 0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RH
pair_completeness 0.503676470588235
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000271665308340125
satellite_probability 2.60623974767306e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatII Ty3-RH TatII Ty3-RH 1 0.00027

clusters with similarity:

Cluster Number of similarity hits
35 9
156 4
67 2
26 1
48 1
54 1
66 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
35 58 0.0155
67 24 0.0089
815 22 0.0346
5180 8 0.013
17 7 0.00112
521 7 0.0107
3930 6 0.00978
24 5 0.0014
30 5 0.00121
40 5 0.00123
245 5 0.00415
559 5 0.00776
48 4 0.00107
51 4 0.00118
156 4 0.0028
8760 4 0.00653
40100 4 0.00656
7 3 0.000597
20 3 0.000759
189 3 0.00193
307 3 0.00417
417 3 0.00451
6840 3 0.0049
28800 3 0.00492
54900 3 0.00493
2 2 0.00033
8 2 0.000932
11 2 0.000493
23 2 0.000695
26 2 0.000766
31 2 0.000363
39 2 0.000999
44 2 0.000568
45 2 0.000627
54 2 0.00127
66 2 0.000599
73 2 0.0014
81 2 0.000717
86 2 0.000666
98 2 0.00136
115 2 0.000863
161 2 0.00106
176 2 0.00184
181 2 0.00149
187 2 0.00163
4470 2 0.00325
26300 2 0.00328
27500 2 0.00328
32400 2 0.00329
70000 2 0.00328
74200 2 0.00328
78100 2 0.00328
102000 2 0.00329
128000 2 0.00329
139000 2 0.00329
175000 2 0.00329
192000 2 0.00329
225000 2 0.00329
243000 2 0.00329
255000 2 0.00329
270000 2 0.00329
303000 2 0.00329
310000 2 0.00329
5 1 0.00047
6 1 0.000232
9 1 0.000316
14 1 0.000259
16 1 0.000326
19 1 0.000412
22 1 0.000308
28 1 0.000504
29 1 0.000425
33 1 0.000533
34 1 0.000345
36 1 0.000475
37 1 0.000275
41 1 0.000286
43 1 0.00032
47 1 0.000331
50 1 0.000457
56 1 0.00121
59 1 0.000601
60 1 0.000609
62 1 0.000311
64 1 0.000684
71 1 0.000357
74 1 0.000496
83 1 0.000568
88 1 0.00035
93 1 0.000737
94 1 0.00111
97 1 0.00047
99 1 0.00079
102 1 0.000346
104 1 0.000708
116 1 0.000383
121 1 0.000903
123 1 0.000621
124 1 0.000676
127 1 0.000564
130 1 0.000384
141 1 0.000548
142 1 0.000708
143 1 0.000564
144 1 0.000909
145 1 0.000503
150 1 0.000639
151 1 0.000678
153 1 0.000532
157 1 0.000733
162 1 0.000569
163 1 0.000537
168 1 0.000576
170 1 0.000603
171 1 0.000696
179 1 0.000836
186 1 0.000539
191 1 0.000654
196 1 0.000609
197 1 0.000665
203 1 0.000871
223 1 0.00107
227 1 0.0011
242 1 0.000939
243 1 0.000836
252 1 0.00114
259 1 0.00123
265 1 0.00137
276 1 0.00101
324 1 0.00132
365 1 0.00147
370 1 0.00153
400 1 0.0015
426 1 0.00147
446 1 0.00149
831 1 0.00159
1110 1 0.00161
1270 1 0.00159
2710 1 0.00162
3280 1 0.00163
4120 1 0.00163
4560 1 0.00164
4920 1 0.00164
5710 1 0.00163
5990 1 0.00163
7360 1 0.00163
7730 1 0.00163
7780 1 0.00164
11200 1 0.00164
12100 1 0.00164
12200 1 0.00164
12700 1 0.00164
15300 1 0.00164
16300 1 0.00164
21300 1 0.00164
21600 1 0.00164
22800 1 0.00164
23200 1 0.00164
26300 1 0.00164
26400 1 0.00164
28600 1 0.00164
33200 1 0.00164
33400 1 0.00164
38200 1 0.00164
40700 1 0.00164
41200 1 0.00164
45700 1 0.00164
46600 1 0.00164
47100 1 0.00164
47100 1 0.00164
49300 1 0.00164
49600 1 0.00164
51900 1 0.00164
58300 1 0.00164
62600 1 0.00164
63800 1 0.00164
64300 1 0.00164
69800 1 0.00164
69900 1 0.00164
70300 1 0.00164
71800 1 0.00164
77800 1 0.00164
80300 1 0.00164
82200 1 0.00164
131000 1 0.00164
135000 1 0.00164
137000 1 0.00164
137000 1 0.00164
142000 1 0.00164
155000 1 0.00164
160000 1 0.00164
164000 1 0.00164
168000 1 0.00164
184000 1 0.00164
199000 1 0.00164
211000 1 0.00164
228000 1 0.00164
249000 1 0.00164
251000 1 0.00164
261000 1 0.00164
279000 1 0.00164
290000 1 0.00164
294000 1 0.00164
304000 1 0.00164
306000 1 0.00164
307000 1 0.00164
309000 1 0.00164
323000 1 0.00164
329000 1 0.00164
337000 1 0.00164
337000 1 0.00164

CL229 ----> CL35

image

No. of shared pairs: :58

CL229 ----> CL67

image

No. of shared pairs: :24

CL229 ----> CL815

image

No. of shared pairs: :22