Cluster no. 230

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Cluster is part of supercluster: 127

Cluster characteristics:

size 3673
size_real 3673
ecount 72662
supercluster 127
annotations_summary 0.03% organelle/plastid
0.03% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatII:Ty3-RT
pair_completeness 0.843875502008032
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.662401306833651
satellite_probability 0.00436543135109352
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00027
TatII Ty3-RT TatII Ty3-RT 1 0.00027

clusters with similarity:

Cluster Number of similarity hits
2 99
5 1
23 1
281 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
2 63 0.0112
118 7 0.00748
2160 7 0.0439
281 5 0.0213
7 3 0.000656
14 3 0.000878
26 3 0.00139
100 3 0.00281
944 3 0.0181
969 3 0.0174
3800 3 0.0187
19 2 0.00101
22 2 0.000716
29 2 0.00105
41 2 0.000658
45 2 0.00073
46 2 0.0012
49 2 0.00111
89 2 0.00139
561 2 0.0117
299000 2 0.0128
1 1 0.000279
3 1 0.000271
4 1 0.000287
5 1 0.000597
6 1 0.00026
11 1 0.000277
16 1 0.000382
17 1 0.000172
20 1 0.000286
21 1 0.000415
23 1 0.000412
24 1 0.000319
25 1 0.000519
30 1 0.000272
34 1 0.000408
36 1 0.000606
38 1 0.000761
39 1 0.000645
43 1 0.000374
53 1 0.000339
64 1 0.000991
65 1 0.000712
66 1 0.000346
73 1 0.00103
74 1 0.000639
81 1 0.000428
83 1 0.000765
91 1 0.00124
96 1 0.00089
97 1 0.000597
98 1 0.000983
99 1 0.00123
102 1 0.00041
103 1 0.000475
112 1 0.00125
115 1 0.000536
126 1 0.000792
130 1 0.000465
132 1 0.00113
140 1 0.000487
143 1 0.000758
144 1 0.00154
149 1 0.00122
150 1 0.000899
153 1 0.000701
175 1 0.00137
183 1 0.0011
202 1 0.00216
211 1 0.00152
222 1 0.00193
225 1 0.00282
234 1 0.00317
241 1 0.00231
243 1 0.00134
253 1 0.00189
287 1 0.00424
341 1 0.00402
342 1 0.00426
855 1 0.00583
2090 1 0.00595
6680 1 0.00631
10200 1 0.00629
11200 1 0.00631
23900 1 0.00633
54100 1 0.00641
84400 1 0.00637
119000 1 0.00639
131000 1 0.00639
184000 1 0.00639
226000 1 0.00639
234000 1 0.00639
240000 1 0.00639
261000 1 0.00639
263000 1 0.00639
292000 1 0.00639

CL230 ----> CL2

image

No. of shared pairs: :63