Cluster no. 231

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Cluster is part of supercluster: 128

Cluster characteristics:

size 3647
size_real 3647
ecount 52946
supercluster 128
annotations_summary 7.73% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
6.31% Class_I/LTR/Ty1_copia/SIRE:Ty1-INT
4.91% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
1.89% Class_I/LTR/Ty1_copia/SIRE:Ty1-PROT
1.45% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.82% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
0.66% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.33% Class_I/LTR/Ty1_copia/Ale:Ty1-INT
0.22% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
0.11% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
0.05% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Bryco:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
pair_completeness 0.816235059760956
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0315327666575267
satellite_probability 5.61649627181165e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-GAG Ivana Ty1-GAG 179 0.04908
SIRE Ty1-GAG SIRE Ty1-GAG 24 0.00658
Ale Ty1-INT Ale Ty1-INT 12 0.00329
Angela Ty1-INT Angela Ty1-INT 8 0.00219
Bryco Ty1-INT Bryco Ty1-INT 1 0.00027
Ikeros Ty1-INT Ikeros Ty1-INT 1 0.00027
Ivana Ty1-INT Ivana Ty1-INT 282 0.07732
SIRE Ty1-INT SIRE Ty1-INT 230 0.06307
TAR Ty1-INT TAR Ty1-INT 2 0.00055
Tork Ty1-INT Tork Ty1-INT 30 0.00823
Ivana Ty1-PROT Ivana Ty1-PROT 4 0.00110
SIRE Ty1-PROT SIRE Ty1-PROT 69 0.01892
SIRE Ty1-RT SIRE Ty1-RT 53 0.01453

clusters with similarity:

Cluster Number of similarity hits
3 49
151 18
159 3
65 1
271 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
151 76 0.0722
159 48 0.0496
3 9 0.00242
17 5 0.000858
11700 4 0.0213
16500 4 0.0213
9 3 0.00109
23 3 0.00122
31 3 0.00059
6 2 0.000516
24 2 0.000633
28 2 0.00128
29 2 0.00104
30 2 0.00054
45 2 0.000722
52 2 0.00102
59 2 0.00161
66 2 0.000686
92 2 0.00256
95 2 0.0018
102 2 0.000811
130 2 0.000917
153 2 0.00137
169 2 0.00222
11600 2 0.0107
12700 2 0.0107
27100 2 0.0108
47600 2 0.0108
79700 2 0.0108
110000 2 0.0108
259000 2 0.0108
4 1 0.000285
10 1 0.000661
14 1 0.00029
15 1 0.000403
16 1 0.000378
19 1 0.000499
25 1 0.000512
39 1 0.000633
41 1 0.000326
42 1 0.000519
43 1 0.00037
46 1 0.000587
48 1 3e-04
49 1 0.000548
54 1 0.000871
56 1 0.00246
57 1 0.000846
61 1 0.000566
67 1 0.00044
68 1 0.00063
69 1 0.00083
75 1 0.000323
77 1 0.000711
78 1 0.000381
86 1 0.000388
96 1 0.000867
98 1 0.000956
100 1 0.000911
115 1 0.000528
123 1 0.000842
134 1 0.00071
178 1 0.00156
179 1 0.00129
193 1 0.00159
194 1 0.00277
209 1 0.0026
212 1 0.00195
213 1 0.000799
214 1 0.00202
219 1 0.00208
258 1 0.00142
276 1 0.00176
290 1 0.00402
294 1 0.0029
298 1 0.00408
404 1 0.00461
2260 1 0.0051
3400 1 0.00525
5880 1 0.00529
5890 1 0.00526
6870 1 0.00536
18900 1 0.00539
20300 1 0.00539
27100 1 0.00535
36800 1 0.00536
48700 1 0.00538
52000 1 0.00541
52600 1 0.00541
55900 1 0.00541
70400 1 0.00541
75800 1 0.00538
82200 1 0.00541
132000 1 0.00539
218000 1 0.00539
252000 1 0.00539
273000 1 0.00539
280000 1 0.00539
304000 1 0.00539

CL231 ----> CL151

image

No. of shared pairs: :76

CL231 ----> CL159

image

No. of shared pairs: :48