Cluster no. 233

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Cluster is part of supercluster: 28

Cluster characteristics:

size 3429
size_real 3429
ecount 1333669
supercluster 28
annotations_summary
pair_completeness 0.835653104925054
pbs_score 0.0
TR_score 0.46424253148131767
TR_monomer_length 127.0
loop_index 0.958588509769612
satellite_probability 0.708031609368761
consensus 
CGCCCTCGCCCGAACGACCGAAACGAAGCGACAAGGGAGAGCCGGGCAAACGAGCTGCACGAGCGTGCACAAAGCCAACC
TCGGGTCACAACTTAGCATTTTTGATACGGGCTCGTCCGCCCGGGCG

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 protein domains:



No protein domains detected



protein domains:


  





 
 Reads annotation summary



No similarity hits to repeat databases found


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    210
    170
  

  

    2
    77
  

  

    74
    10
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    210
    55
    0.182
  

  

    2
    36
    0.00642
  

  

    217
    15
    0.0227
  

  

    74
    14
    0.00896
  

  

    104
    4
    0.00418
  

  

    30600
    4
    0.0257
  

  

    164
    3
    0.00824
  

  

    9
    2
    0.000737
  

  

    10
    2
    0.00135
  

  

    11
    2
    0.000555
  

  

    15
    2
    0.000816
  

  

    31
    2
    0.000396
  

  

    34
    2
    0.000817
  

  

    56
    2
    0.00533
  

  

    72
    2
    0.00145
  

  

    85
    2
    0.00139
  

  

    93
    2
    0.00222
  

  

    116
    2
    0.000926
  

  

    39700
    2
    0.0129
  

  

    1
    1
    0.000279
  

  

    4
    1
    0.000287
  

  

    6
    1
    0.00026
  

  

    17
    1
    0.000172
  

  

    21
    1
    0.000415
  

  

    24
    1
    0.000319
  

  

    25
    1
    0.00052
  

  

    27
    1
    7e-04
  

  

    28
    1
    0.000653
  

  

    33
    1
    0.000703
  

  

    35
    1
    0.000304
  

  

    39
    1
    0.000646
  

  

    40
    1
    0.000276
  

  

    41
    1
    0.000329
  

  

    46
    1
    0.000598
  

  

    47
    1
    0.00039
  

  

    51
    1
    0.00034
  

  

    57
    1
    0.000869
  

  

    59
    1
    0.000827
  

  

    63
    1
    0.000327
  

  

    66
    1
    0.000346
  

  

    67
    1
    0.000446
  

  

    81
    1
    0.000428
  

  

    83
    1
    0.000766
  

  

    88
    1
    0.000416
  

  

    89
    1
    0.000698
  

  

    92
    1
    0.00134
  

  

    97
    1
    0.000598
  

  

    109
    1
    0.00121
  

  

    111
    1
    0.000378
  

  

    127
    1
    0.000759
  

  

    132
    1
    0.00113
  

  

    144
    1
    0.00155
  

  

    145
    1
    0.000652
  

  

    160
    1
    0.00102
  

  

    167
    1
    0.000683
  

  

    168
    1
    0.00078
  

  

    169
    1
    0.00115
  

  

    183
    1
    0.0011
  

  

    184
    1
    0.00181
  

  

    194
    1
    0.00303
  

  

    196
    1
    0.000841
  

  

    202
    1
    0.00217
  

  

    204
    1
    0.00217
  

  

    214
    1
    0.00216
  

  

    244
    1
    0.00384
  

  

    249
    1
    0.00252
  

  

    263
    1
    0.00157
  

  

    289
    1
    0.00396
  

  

    346
    1
    0.0043
  

  

    370
    1
    0.00506
  

  

    385
    1
    0.00604
  

  

    490
    1
    0.00482
  

  

    552
    1
    0.00546
  

  

    2610
    1
    0.00617
  

  

    3050
    1
    0.00639
  

  

    3520
    1
    0.00635
  

  

    5440
    1
    0.00631
  

  

    6360
    1
    0.00639
  

  

    20000
    1
    0.00643
  

  

    27400
    1
    0.00645
  

  

    34200
    1
    0.00647
  

  

    38000
    1
    0.00643
  

  

    53400
    1
    0.00645
  

  

    54500
    1
    0.00645
  

  

    72400
    1
    0.00645
  

  

    185000
    1
    0.00647
  

  

    186000
    1
    0.00647
  

       

     

  		
 





  
CL233 ----> CL210

       image
     
 No. of shared pairs: :55





  
CL233 ----> CL2

       image
     
 No. of shared pairs: :36





  
CL233 ----> CL217

       image
     
 No. of shared pairs: :15





  
CL233 ----> CL74

       image
     
 No. of shared pairs: :14