Cluster no. 234

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Cluster is part of supercluster: 130

Cluster characteristics:

size 3420
size_real 3420
ecount 44181
supercluster 130
annotations_summary 0.03% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-INT
0.03% organelle/plastid
pair_completeness 0.828877005347594
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0725146198830409
satellite_probability 3.911835579523e-19
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 0.00029
CRM Ty3-INT CRM Ty3-INT 1 0.00029

clusters with similarity:

Cluster Number of similarity hits
189 14
256 2
281 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
281 14 0.0585
189 11 0.00995
6 4 0.00104
17 4 0.000689
2 3 0.000535
22 3 0.00107
23 3 0.00123
34 3 0.00122
128 3 0.00354
184 3 0.00536
256 3 0.00757
10700 3 0.0185
7 2 0.000437
25 2 0.00104
27 2 0.00139
31 2 0.000395
40 2 0.000551
42 2 0.00105
68 2 0.00128
98 2 0.00196
120 2 0.00141
130 2 0.000928
8730 2 0.0123
93900 2 0.0124
220000 2 0.0124
344000 2 0.0124
1 1 0.000279
3 1 0.000271
8 1 0.000589
19 1 0.000505
26 1 0.000462
30 1 0.000272
35 1 0.000303
36 1 0.000604
43 1 0.000373
45 1 0.000364
48 1 0.000302
49 1 0.000556
59 1 0.000823
66 1 0.000346
67 1 0.000445
71 1 0.000425
72 1 0.000719
76 1 0.000683
88 1 0.000415
106 1 0.000656
109 1 0.0012
116 1 0.000462
117 1 0.000766
124 1 0.00097
135 1 0.000908
136 1 0.00137
140 1 0.000486
158 1 0.000913
166 1 0.00122
167 1 0.00068
180 1 0.00179
181 1 0.00112
182 1 0.00108
183 1 0.00109
186 1 0.000709
187 1 0.00129
194 1 0.00297
201 1 0.00383
219 1 0.00219
225 1 0.00279
230 1 0.00317
328 1 0.00366
425 1 0.00446
846 1 0.00573
1100 1 0.00573
2270 1 0.00604
4540 1 0.00606
4980 1 0.00612
9920 1 0.00619
11900 1 0.00617
15100 1 0.00615
25200 1 0.00619
30300 1 0.00621
34700 1 0.00617
54900 1 0.00619
61500 1 0.00623
68400 1 0.00619
84000 1 0.00623
124000 1 0.00621
141000 1 0.00621
248000 1 0.00621
271000 1 0.00621
285000 1 0.00621
308000 1 0.00621
326000 1 0.00621
339000 1 0.00621

CL234 ----> CL281

image

No. of shared pairs: :14

CL234 ----> CL189

image

No. of shared pairs: :11