Cluster no. 235

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Cluster is part of supercluster: 131

Cluster characteristics:

size 3387
size_real 3387
ecount 25134
supercluster 131
annotations_summary 0.03% organelle/plastid
pair_completeness 0.458028411536806
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000295246530853262
satellite_probability 3.90603663686178e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 1 3e-04

clusters with similarity:

Cluster Number of similarity hits
123 1
186 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
172 77 0.0434
1080 16 0.0246
2 9 0.00148
21 5 0.00173
48 4 0.00106
81 4 0.00142
12100 4 0.00631
45 3 0.000934
50 3 0.00136
114 3 0.00241
143 3 0.00167
189 3 0.0019
2240 3 0.00469
23000 3 0.00475
3 2 0.00048
5 2 0.00093
7 2 0.000397
44 2 0.000564
68 2 0.000984
80 2 0.00103
85 2 0.00104
128 2 0.00152
138 2 0.00149
156 2 0.00138
3100 2 0.00314
7480 2 0.00315
19700 2 0.00317
20200 2 0.00316
35000 2 0.00317
94600 2 0.00317
106000 2 0.00317
130000 2 0.00317
209000 2 0.00317
234000 2 0.00317
310000 2 0.00317
6 1 0.000231
14 1 0.000257
16 1 0.000323
18 1 0.000418
19 1 0.000408
23 1 0.000345
24 1 0.000277
29 1 0.000421
30 1 0.000241
33 1 0.000527
56 1 0.00118
59 1 0.000593
72 1 0.000538
74 1 0.000491
76 1 0.000517
78 1 0.000326
86 1 0.000331
87 1 0.000525
90 1 0.000336
96 1 0.000626
98 1 0.000671
104 1 0.000697
106 1 0.000502
120 1 0.000529
122 1 0.000551
123 1 0.000613
126 1 0.000576
131 1 0.00113
132 1 0.000735
148 1 0.000606
153 1 0.000526
157 1 0.000721
158 1 0.000639
161 1 0.000522
163 1 0.000531
167 1 0.000515
170 1 0.000595
180 1 0.000972
186 1 0.000532
191 1 0.000645
195 1 0.00101
196 1 0.000601
201 1 0.00137
211 1 0.000884
219 1 0.00108
241 1 0.0011
245 1 0.000816
250 1 0.00128
263 1 0.000897
281 1 0.00141
351 1 0.00133
352 1 0.00127
360 1 0.00134
449 1 0.00149
464 1 0.00149
1040 1 0.00154
1060 1 0.00155
1640 1 0.00157
1860 1 0.00155
2210 1 0.00156
2520 1 0.00158
3200 1 0.00157
4700 1 0.00158
4960 1 0.00157
8270 1 0.00158
11900 1 0.00158
12800 1 0.00158
12800 1 0.00158
13000 1 0.00158
13100 1 0.00158
13300 1 0.00158
14200 1 0.00158
16600 1 0.00159
21700 1 0.00158
21700 1 0.00159
24300 1 0.00158
28600 1 0.00158
32200 1 0.00159
35400 1 0.00159
35700 1 0.00159
38700 1 0.00159
40200 1 0.00158
44200 1 0.00158
47500 1 0.00158
49600 1 0.00158
53200 1 0.00159
56700 1 0.00158
58800 1 0.00159
59600 1 0.00159
70100 1 0.00159
70900 1 0.00158
75300 1 0.00159
79100 1 0.00158
81500 1 0.00159
83800 1 0.00158
94200 1 0.00159
102000 1 0.00159
107000 1 0.00159
109000 1 0.00159
114000 1 0.00159
115000 1 0.00159
122000 1 0.00159
127000 1 0.00159
129000 1 0.00159
130000 1 0.00159
137000 1 0.00159
140000 1 0.00159
155000 1 0.00159
158000 1 0.00159
172000 1 0.00159
173000 1 0.00159
186000 1 0.00159
186000 1 0.00159
187000 1 0.00159
191000 1 0.00159
196000 1 0.00159
205000 1 0.00159
211000 1 0.00159
218000 1 0.00159
218000 1 0.00159
221000 1 0.00159
223000 1 0.00159
227000 1 0.00159
232000 1 0.00159
243000 1 0.00159
243000 1 0.00159
243000 1 0.00159
271000 1 0.00159
273000 1 0.00159
280000 1 0.00159
285000 1 0.00159
295000 1 0.00159
301000 1 0.00159
301000 1 0.00159
320000 1 0.00159
334000 1 0.00159
335000 1 0.00159

CL235 ----> CL172

image

No. of shared pairs: :77

CL235 ----> CL1075

image

No. of shared pairs: :16