Cluster no. 236

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Cluster is part of supercluster: 132

Cluster characteristics:

size 3375
size_real 3375
ecount 64419
supercluster 132
annotations_summary 100.00% organelle/plastid
pair_completeness 0.940770557791834
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000296296296296296
satellite_probability 1.22924222468107e-24
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 3375 1

clusters with similarity:

Cluster Number of similarity hits
270 14
188 3

clusters connected through mates:

Cluster Number of shared
read pairs
k
270 11 0.121
188 7 0.0444
201 4 0.0262
41 2 0.000681
5 1 0.000636
8 1 0.000629
16 1 0.000398
19 1 0.000534
22 1 0.000372
26 1 0.000487
32 1 0.000677
40 1 0.000284
42 1 0.000557
43 1 0.000389
53 1 0.000351
63 1 0.000338
70 1 0.00113
71 1 0.000446
77 1 0.000785
78 1 0.000401
88 1 0.000434
99 1 0.00141
111 1 0.000393
119 1 0.00172
131 1 0.00324
132 1 0.00128
136 1 0.0016
138 1 0.00131
175 1 0.0016
204 1 0.00279
210 1 0.00499
214 1 0.00276
237 1 0.00274
259 1 0.00387
277 1 0.00551
335 1 0.00901
3440 1 0.0177
17100 1 0.0187
67500 1 0.0192
204000 1 0.019
240000 1 0.019
344000 1 0.019

CL236 ----> CL270

image

No. of shared pairs: :11