Cluster no. 238

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Cluster is part of supercluster: 134

Cluster characteristics:

size 3256
size_real 3256
ecount 577969
supercluster 134
annotations_summary 11.39% 5S_rDNA/5S_rDNA
pair_completeness 0.705605028810896
pbs_score 0.0
TR_score 0.5914750296772768
TR_monomer_length 428.0
loop_index 0.91031941031941
satellite_probability 0.0377690659766081
consensus 
CAGTTAAGCGCGCTTGAGCCAGAGGAGTTCTGGGATGGGTGACCTCCTGGGAAGTCCTGGTTACCGGGTGCAAGCCCCGG
AAGTGATGATTGATGCTATGTGATTCATTTCACTAGTTTCAATCCCACTTCTTCACCCCTGTGAGCATCACCCGATGCAA
TGAGTGCTAAGTGAACTATTCAAAAATCATGAGAAATTAGTCAGTTACGACTACCTCTCATGGAAATGGTCATACGTTTG
AATGACTTACTTAACGCAGTTGAATCCCAAAAATGATATCTAATATAATGCACTGCGTAAATCCCCCATACTTAAATTCA
AAAAGAGTCAAGGGATCTCTACTTGAATGGTTCATGAGGCACAATACTTGCTAAGGTTTTGCAAATGGGGTAGCAAGCTA
AGTGGGCTTGATTGTGGGGAAAACTCCA

  

  

    TAREAN_annotation
    Putative satellite (low confidence)
  

  

    orientation_score
    1
  

 


 
 protein domains:



protein domains:


  





 
 Reads annotation summary










	

	 
	
 
		   
		cl_string  
		domain  
		Freq  
		proportion 
	
 

 
5S_rDNA 

5S_rDNA



371

0.11


 
	


 

 


 
 clusters with similarity:



  

    
      



 

    Cluster
    Number of similarity hits
  

      

   		
 

 

   
     

       



  

    38
    1
  

  

    55
    1
  

  

    98
    1
  

  

    117
    1
  

  

    119
    1
  

  

    122
    1
  

       

     

  		
 




 
 clusters connected through mates:



  

    
      




 

    Cluster
    Number of shared
 read pairs		
    k
  

      

   		
 

 

   
     

       




  

    4
    5
    0.00138
  

  

    7
    5
    0.00106
  

  

    81
    5
    0.00203
  

  

    33
    4
    0.00258
  

  

    98
    4
    0.0035
  

  

    1
    3
    0.00081
  

  

    6
    3
    0.000755
  

  

    12
    3
    0.000708
  

  

    14
    3
    0.000847
  

  

    17
    3
    0.000506
  

  

    23
    3
    0.00118
  

  

    36
    3
    0.00169
  

  

    38
    3
    0.00208
  

  

    43
    3
    0.00107
  

  

    45
    3
    0.00105
  

  

    74
    3
    0.00178
  

  

    104
    3
    0.00276
  

  

    105
    3
    0.00177
  

  

    245
    3
    0.00342
  

  

    4040
    3
    0.0105
  

  

    11
    2
    0.000536
  

  

    15
    2
    0.000776
  

  

    21
    2
    0.000789
  

  

    40
    2
    0.000534
  

  

    53
    2
    0.00065
  

  

    67
    2
    0.000844
  

  

    68
    2
    0.00119
  

  

    69
    2
    0.00154
  

  

    72
    2
    0.00132
  

  

    78
    2
    0.000735
  

  

    85
    2
    0.00127
  

  

    119
    2
    0.00247
  

  

    125
    2
    0.00198
  

  

    130
    2
    0.000879
  

  

    132
    2
    0.00198
  

  

    162
    2
    0.0014
  

  

    166
    2
    0.00212
  

  

    179
    2
    0.0023
  

  

    285
    2
    0.00488
  

  

    294
    2
    0.00454
  

  

    257000
    2
    0.00709
  

  

    2
    1
    0.000174
  

  

    3
    1
    0.000262
  

  

    9
    1
    0.000352
  

  

    10
    1
    0.000622
  

  

    13
    1
    0.00059
  

  

    19
    1
    0.000476
  

  

    20
    1
    0.000276
  

  

    22
    1
    0.000343
  

  

    26
    1
    0.000438
  

  

    27
    1
    0.000643
  

  

    28
    1
    0.000603
  

  

    30
    1
    0.000263
  

  

    31
    1
    0.000193
  

  

    32
    1
    0.000586
  

  

    34
    1
    0.000388
  

  

    35
    1
    0.000292
  

  

    42
    1
    0.000494
  

  

    44
    1
    0.000313
  

  

    47
    1
    0.000371
  

  

    49
    1
    0.000521
  

  

    51
    1
    0.000326
  

  

    54
    1
    0.000803
  

  

    55
    1
    0.000255
  

  

    57
    1
    0.000782
  

  

    60
    1
    0.000761
  

  

    64
    1
    0.000881
  

  

    75
    1
    0.000314
  

  

    79
    1
    0.000381
  

  

    80
    1
    0.000629
  

  

    82
    1
    0.00081
  

  

    83
    1
    0.000698
  

  

    84
    1
    0.000559
  

  

    86
    1
    0.000374
  

  

    95
    1
    0.000828
  

  

    99
    1
    0.00106
  

  

    100
    1
    0.000837
  

  

    101
    1
    0.000568
  

  

    106
    1
    0.000608
  

  

    108
    1
    0.000939
  

  

    113
    1
    0.000651
  

  

    114
    1
    0.00111
  

  

    115
    1
    0.000502
  

  

    117
    1
    0.000701
  

  

    118
    1
    0.000942
  

  

    120
    1
    0.000649
  

  

    122
    1
    0.000682
  

  

    124
    1
    0.000868
  

  

    133
    1
    0.000336
  

  

    135
    1
    0.000818
  

  

    136
    1
    0.00117
  

  

    139
    1
    0.000738
  

  

    141
    1
    0.000668
  

  

    145
    1
    0.000602
  

  

    148
    1
    0.000768
  

  

    149
    1
    0.00106
  

  

    151
    1
    0.00087
  

  

    152
    1
    0.000503
  

  

    154
    1
    0.00123
  

  

    155
    1
    0.001
  

  

    158
    1
    0.000822
  

  

    161
    1
    0.000638
  

  

    164
    1
    0.00203
  

  

    170
    1
    0.00075
  

  

    175
    1
    0.00117
  

  

    185
    1
    0.000947
  

  

    186
    1
    0.000653
  

  

    187
    1
    0.00111
  

  

    189
    1
    0.000815
  

  

    195
    1
    0.00156
  

  

    203
    1
    0.00122
  

  

    211
    1
    0.00128
  

  

    213
    1
    0.000742
  

  

    215
    1
    0.00149
  

  

    217
    1
    0.00127
  

  

    222
    1
    0.00155
  

  

    226
    1
    0.00206
  

  

    248
    1
    0.00204
  

  

    255
    1
    0.00139
  

  

    283
    1
    0.00255
  

  

    291
    1
    0.00217
  

  

    314
    1
    0.00243
  

  

    320
    1
    0.00315
  

  

    351
    1
    0.00247
  

  

    361
    1
    0.00269
  

  

    387
    1
    0.00326
  

  

    822
    1
    0.00334
  

  

    932
    1
    0.0035
  

  

    1080
    1
    0.00342
  

  

    1410
    1
    0.00348
  

  

    2040
    1
    0.00344
  

  

    2130
    1
    0.00346
  

  

    2540
    1
    0.00351
  

  

    2820
    1
    0.00344
  

  

    3680
    1
    0.00347
  

  

    3720
    1
    0.00344
  

  

    4730
    1
    0.0035
  

  

    5210
    1
    0.00351
  

  

    5350
    1
    0.00351
  

  

    5380
    1
    0.00351
  

  

    6650
    1
    0.00351
  

  

    6980
    1
    0.0035
  

  

    7640
    1
    0.00353
  

  

    8650
    1
    0.00351
  

  

    9630
    1
    0.00354
  

  

    10800
    1
    0.00351
  

  

    13000
    1
    0.00352
  

  

    14500
    1
    0.00354
  

  

    15300
    1
    0.00353
  

  

    18600
    1
    0.00355
  

  

    19900
    1
    0.00353
  

  

    22500
    1
    0.00353
  

  

    23700
    1
    0.00354
  

  

    24000
    1
    0.00354
  

  

    24100
    1
    0.00353
  

  

    24600
    1
    0.00354
  

  

    24800
    1
    0.00354
  

  

    26200
    1
    0.00353
  

  

    30500
    1
    0.00355
  

  

    36500
    1
    0.00353
  

  

    39700
    1
    0.00355
  

  

    41800
    1
    0.00353
  

  

    42200
    1
    0.00355
  

  

    49800
    1
    0.00354
  

  

    51800
    1
    0.00355
  

  

    52000
    1
    0.00355
  

  

    53000
    1
    0.00355
  

  

    54500
    1
    0.00355
  

  

    56300
    1
    0.00355
  

  

    56300
    1
    0.00354
  

  

    67000
    1
    0.00355
  

  

    71200
    1
    0.00355
  

  

    82200
    1
    0.00354
  

  

    82300
    1
    0.00354
  

  

    82600
    1
    0.00355
  

  

    84300
    1
    0.00355
  

  

    121000
    1
    0.00355
  

  

    129000
    1
    0.00355
  

  

    149000
    1
    0.00355
  

  

    156000
    1
    0.00355
  

  

    165000
    1
    0.00355
  

  

    165000
    1
    0.00355
  

  

    211000
    1
    0.00355
  

  

    221000
    1
    0.00355
  

  

    236000
    1
    0.00355
  

  

    249000
    1
    0.00355
  

  

    267000
    1
    0.00355
  

  

    271000
    1
    0.00355
  

  

    276000
    1
    0.00355
  

  

    282000
    1
    0.00355
  

  

    283000
    1
    0.00355
  

  

    293000
    1
    0.00355
  

  

    348000
    1
    0.00355