Cluster no. 239

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Cluster is part of supercluster: 135

Cluster characteristics:

size 3216
size_real 3216
ecount 15001
supercluster 135
annotations_summary 6.87% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
3.05% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-PROT
pair_completeness 0.682008368200837
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0133706467661692
satellite_probability 1.74710246978928e-21
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 221 0.069
Athila Ty3-PROT Athila Ty3-PROT 98 0.030

clusters with similarity:

Cluster Number of similarity hits
121 7
4 1
181 1

clusters connected through mates:

Cluster Number of shared
read pairs
k
121 33 0.041
2000 16 0.0513
339 15 0.039
1330 12 0.0382
17500 6 0.0195
17 5 0.000841
47 5 0.00184
3020 5 0.016
6110 5 0.0161
130 4 0.00174
1580 4 0.0129
1630 4 0.0126
5010 4 0.013
8430 4 0.013
23 3 0.00116
153 3 0.0019
169 3 0.00294
6770 3 0.00974
6920 3 0.00977
9060 3 0.00974
9600 3 0.00979
12300 3 0.00977
16800 3 0.0098
58000 3 0.00982
75100 3 0.00982
84200 3 0.00982
6 2 5e-04
30 2 0.000523
38 2 0.00137
90 2 0.000756
134 2 0.00131
170 2 0.00148
197 2 0.00167
245 2 0.00222
7780 2 0.0065
10400 2 0.00653
13300 2 0.00653
18500 2 0.00651
20700 2 0.00651
42100 2 0.00654
45000 2 0.00656
81000 2 0.00655
84700 2 0.00655
142000 2 0.00656
166000 2 0.00656
256000 2 0.00656
288000 2 0.00656
3e+05 2 0.00656
324000 2 0.00656
343000 2 0.00656
348000 2 0.00656
2 1 0.000174
5 1 0.000548
12 1 0.000235
13 1 0.000583
14 1 0.000281
15 1 0.000384
18 1 0.000484
20 1 0.000274
22 1 0.00034
29 1 0.000488
31 1 0.000192
37 1 0.000301
41 1 0.000314
50 1 0.000531
54 1 0.000789
59 1 0.000736
63 1 0.000311
65 1 0.000644
67 1 0.000418
74 1 0.000584
85 1 0.000628
87 1 0.000634
89 1 0.000632
91 1 0.00105
93 1 0.00095
94 1 0.00167
99 1 0.00104
103 1 0.000444
111 1 0.000358
115 1 0.000496
120 1 0.000639
122 1 0.000671
124 1 0.000851
129 1 0.00113
145 1 0.000593
151 1 0.000853
154 1 0.00119
156 1 0.00089
162 1 0.000688
163 1 0.000641
166 1 0.00103
176 1 0.00128
181 1 0.000964
183 1 0.000942
186 1 0.000644
187 1 0.00108
191 1 0.000817
202 1 0.00164
204 1 0.00164
208 1 0.00144
222 1 0.0015
272 1 0.0015
301 1 0.00244
375 1 0.00277
495 1 0.00284
534 1 0.00307
607 1 0.0029
632 1 0.00308
777 1 0.00305
887 1 0.00309
1180 1 0.00315
6030 1 0.00325
6420 1 0.00327
7900 1 0.00327
8050 1 0.00325
8320 1 0.00326
14000 1 0.00326
14400 1 0.00328
17600 1 0.00327
22600 1 0.00328
23200 1 0.00327
23800 1 0.00327
24400 1 0.00327
24600 1 0.00327
25300 1 0.00326
27300 1 0.00326
29500 1 0.00327
29500 1 0.00327
37100 1 0.00328
39100 1 0.00327
39600 1 0.00327
42900 1 0.00327
45800 1 0.00328
47700 1 0.00327
51500 1 0.00327
55000 1 0.00327
55800 1 0.00327
62600 1 0.00327
63100 1 0.00327
70600 1 0.00327
71100 1 0.00328
72400 1 0.00327
79200 1 0.00328
80700 1 0.00327
82900 1 0.00328
84000 1 0.00327
84400 1 0.00327
115000 1 0.00328
117000 1 0.00328
119000 1 0.00328
130000 1 0.00328
133000 1 0.00328
160000 1 0.00328
163000 1 0.00328
170000 1 0.00328
173000 1 0.00328
177000 1 0.00328
203000 1 0.00328
204000 1 0.00328
205000 1 0.00328
223000 1 0.00328
235000 1 0.00328
236000 1 0.00328
251000 1 0.00328
271000 1 0.00328
276000 1 0.00328
278000 1 0.00328
287000 1 0.00328
294000 1 0.00328
304000 1 0.00328
312000 1 0.00328
319000 1 0.00328
325000 1 0.00328
332000 1 0.00328

CL239 ----> CL121

image

No. of shared pairs: :33

CL239 ----> CL2003

image

No. of shared pairs: :16

CL239 ----> CL339

image

No. of shared pairs: :15

CL239 ----> CL1330

image

No. of shared pairs: :12