Cluster no. 241

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Cluster is part of supercluster: 137

Cluster characteristics:

size 3088
size_real 3088
ecount 21371
supercluster 137
annotations_summary 12.99% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
9.16% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
8.32% Class_I/LTR/Ty1_copia/Ivana:Ty1-RH
2.59% Class_I/LTR/Ty1_copia/Ivana:Ty1-GAG
2.43% Class_I/LTR/Ty1_copia/Ivana:Ty1-PROT
2.27% organelle/mitochondria
1.07% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
0.52% Class_I/LTR/Ty1_copia/Gymco-II:Ty1-INT
0.26% Class_I/LTR/Ty1_copia/Ale:Ty1-RT
0.23% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
0.16% Class_I/LTR/Ty1_copia/Gymco-I:Ty1-INT
0.06% Class_I/LTR/Ty1_copia/Alesia:Ty1-RT
0.03% Class_I/LTR/Ty1_copia/SIRE:Ty1-GAG
0.03% Class_I/LTR/Ty1_copia/Alesia:Ty1-INT
0.03% Class_I/LTR/Ty1_copia/Tork:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
0.03% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
pair_completeness 0.694840834248079
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.000971502590673575
satellite_probability 1.94805139038498e-22
consensus None
TAREAN_annotation Other
orientation_score 1

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
mitochondria mitochondria 70 0.02267
Ivana Ty1-GAG Ivana Ty1-GAG 80 0.02591
SIRE Ty1-GAG SIRE Ty1-GAG 1 0.00032
Alesia Ty1-INT Alesia Ty1-INT 1 0.00032
Angela Ty1-INT Angela Ty1-INT 1 0.00032
Gymco-I Ty1-INT Gymco-I Ty1-INT 5 0.00162
Gymco-II Ty1-INT Gymco-II Ty1-INT 16 0.00518
Ivana Ty1-INT Ivana Ty1-INT 283 0.09165
TAR Ty1-INT TAR Ty1-INT 7 0.00227
Ivana Ty1-PROT Ivana Ty1-PROT 75 0.02429
Ale Ty1-RH Ale Ty1-RH 1 0.00032
Ivana Ty1-RH Ivana Ty1-RH 257 0.08323
Tork Ty1-RH Tork Ty1-RH 1 0.00032
Ale Ty1-RT Ale Ty1-RT 8 0.00259
Alesia Ty1-RT Alesia Ty1-RT 2 0.00065
Ivana Ty1-RT Ivana Ty1-RT 401 0.12986
SIRE Ty1-RT SIRE Ty1-RT 33 0.01069

clusters with similarity:

Cluster Number of similarity hits
17 1
39 1
64 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
327 19 0.0506
17 4 0.000675
48 3 0.000876
63 2 0.000628
112 2 0.00217
120 2 0.0013
126 2 0.00144
163 2 0.0013
730 2 0.00655
156000 2 0.00717
161000 2 0.00717
2 1 0.000175
7 1 0.000213
9 1 0.000352
10 1 0.000623
11 1 0.000268
14 1 0.000283
24 1 0.000307
31 1 0.000193
35 1 0.000293
37 1 0.000303
45 1 0.000349
46 1 0.000557
49 1 0.000522
51 1 0.000326
57 1 0.000784
59 1 0.00075
61 1 0.000538
74 1 0.000593
81 1 0.000407
85 1 0.000638
86 1 0.000374
89 1 0.000642
90 1 0.000382
92 1 0.00114
97 1 0.000556
99 1 0.00107
102 1 0.000391
109 1 0.00105
115 1 0.000503
118 1 0.000945
119 1 0.00124
130 1 0.00044
142 1 0.000924
143 1 0.000693
146 1 0.001
151 1 0.000873
153 1 0.000646
162 1 7e-04
195 1 0.00156
197 1 0.000851
230 1 0.00231
235 1 0.0011
237 1 0.00169
242 1 0.00136
245 1 0.00114
386 1 0.00312
559 1 0.00317
727 1 0.00334
1040 1 0.00342
1300 1 0.00345
1690 1 0.0035
1700 1 0.00344
5050 1 0.00355
16100 1 0.00359
20900 1 0.00357
21300 1 0.00357
27500 1 0.00358
29200 1 0.00359
35300 1 0.00358
44400 1 0.00358
47100 1 0.00359
54700 1 0.00359
61800 1 0.00359
62900 1 0.00359
65400 1 0.00358
74800 1 0.00359
78600 1 0.00359
84400 1 0.00359
93800 1 0.00358
97900 1 0.00358
101000 1 0.00358
102000 1 0.00358
146000 1 0.00358
153000 1 0.00358
159000 1 0.00358
161000 1 0.00358
176000 1 0.00358
191000 1 0.00358
221000 1 0.00358
228000 1 0.00358
234000 1 0.00358
244000 1 0.00358
254000 1 0.00358
286000 1 0.00358
295000 1 0.00358
3e+05 1 0.00358

CL241 ----> CL327

image

No. of shared pairs: :19